PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0277s0054.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 398aa    MW: 43331.8 Da    PI: 7.587
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0277s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35771672101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d +++++isw+e+g++fvv+++ efa++vLpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k
  Kalax.0277s0054.1.p  77 FLTKTYQLVDDISIDSIISWNEDGTAFVVWNPAEFARDVLPKYFKHNNFSSFVRQLNTYGFRKVMPDR---------WEFSNDCFRRGDK 157
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i r+k
  Kalax.0277s0054.1.p 158 RLLCDIVRRK 167
                          *******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-5773166IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.8E-3873161IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.71E-3474166IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-1977100IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3277166IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-19115127IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340116140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-19128140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MRKSHSSTPT TSLNLLFSSL LFSSSAFPHL PQSQPHRQQL RLQLQLQLQP QIVAVDLPPP  60
PPPPTVPDAQ RFIPTPFLTK TYQLVDDISI DSIISWNEDG TAFVVWNPAE FARDVLPKYF  120
KHNNFSSFVR QLNTYGFRKV MPDRWEFSND CFRRGDKRLL CDIVRRKLMS GVSGSSSALT  180
VSAQPVLMDP STSQSGEGQV FSSNSTPTSA APMATVFLDH QNNSGNNIGS SSSNNCGNAA  240
RAHLIDENDR LKKENTQLWK ELSQMKSMCT NIYSMMSNYN PGSGPVPGLG HGLGPPMHAA  300
AGCGSSNNSS QAESVMNPAM NPVAIDLMSS RRLLAAVAEI QAATPAAQPA AEENLCMHSR  360
LFGFQLGSKR ARGDGSSDPM DQEDLLQLQQ PGPSFNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-245416611129Heat shock factor protein 1
5d5v_B2e-245416611129Heat shock factor protein 1
5d5v_D2e-245416611129Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_007152318.12e-83(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-61heat shock transcription factor B2A