PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0277s0054.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 360aa    MW: 38904.7 Da    PI: 6.305
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0277s0054.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1141e-35391292101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d +++++isw+e+g++fvv+++ efa++vLpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k
  Kalax.0277s0054.2.p  39 FLTKTYQLVDDISIDSIISWNEDGTAFVVWNPAEFARDVLPKYFKHNNFSSFVRQLNTYGFRKVMPDR---------WEFSNDCFRRGDK 119
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i r+k
  Kalax.0277s0054.2.p 120 RLLCDIVRRK 129
                          *******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.5E-5735128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.5E-3835123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.76E-3436128IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3239128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-203962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAHQPPPLPL GEQIVAVDLP PPPPPPTVPD AQRFIPTPFL TKTYQLVDDI SIDSIISWNE  60
DGTAFVVWNP AEFARDVLPK YFKHNNFSSF VRQLNTYGFR KVMPDRWEFS NDCFRRGDKR  120
LLCDIVRRKL MSGVSGSSSA LTVSAQPVLM DPSTSQSGEG QVFSSNSTPT SAAPMATVFL  180
DHQNNSGNNI GSSSSNNCGN AARAHLIDEN DRLKKENTQL WKELSQMKSM CTNIYSMMSN  240
YNPGSGPVPG LGHGLGPPMH AAAGCGSSNN SSQAESVMNP AMNPVAIDLM SSRRLLAAVA  300
EIQAATPAAQ PAAEENLCMH SRLFGFQLGS KRARGDGSSD PMDQEDLLQL QQPGPSFNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-243912829129Heat shock factor protein 1
5d5v_B1e-243912829129Heat shock factor protein 1
5d5v_D1e-243912829129Heat shock factor protein 1
5hdg_A9e-253912810110Heat shock factor protein 1
5hdn_A9e-253912810110Heat shock factor protein 1
5hdn_B9e-253912810110Heat shock factor protein 1
5hdn_C9e-253912810110Heat shock factor protein 1
5hdn_D9e-253912810110Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_007152318.12e-83(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-61heat shock transcription factor B2A