PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0279s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 181aa    MW: 20358.4 Da    PI: 9.2743
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0279s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.51.7e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krie+k  rqvtfskR+ g++KKA+ELSvLCd++va+ ifss+gk+yeyss
  Kalax.0279s0029.1.p  9 KRIEDKNSRQVTFSKRKSGLMKKANELSVLCDVDVALFIFSSKGKMYEYSS 59
                         79***********************************************96 PP
2K-box19.54e-08861491376
                K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 
                          ++++++ e a L   i+ ++  +R l     ++L++ eL qL q+Le+ l++ R kK++ + e+
  Kalax.0279s0029.1.p  86 ETKKCHAEDAGLSGSINLMRLINRSLDPTTDNPLNVPELTQLDQHLEDLLRHTRFKKEQAMWES 149
                          56677777777888888888777888888889****************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.992161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-31281IPR002100Transcription factor, MADS-box
CDDcd002659.37E-38273No hitNo description
PRINTSPR004041.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-586149IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGRGKVELKR IEDKNSRQVT FSKRKSGLMK KANELSVLCD VDVALFIFSS KGKMYEYSSG  60
SSLKRILERH QSPFEAENAA RKHVLETKKC HAEDAGLSGS INLMRLINRS LDPTTDNPLN  120
VPELTQLDQH LEDLLRHTRF KKEQAMWESA LATVEEVLKN CSISSMLDRG ALPLLNLNCK  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-20189189MEF2 CHIMERA
6byy_B2e-20189189MEF2 CHIMERA
6byy_C2e-20189189MEF2 CHIMERA
6byy_D2e-20189189MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107381.17e-45truncated transcription factor CAULIFLOWER A-like
TrEMBLI6ZX141e-43I6ZX14_CAMSI; MADS-box domain protein
STRINGXP_009344924.14e-42(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.14e-37MIKC_MADS family protein