PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0279s0029.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 79aa    MW: 8790.27 Da    PI: 10.1964
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0279s0029.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.22.5e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krie+k  rqvtfskR+ g++KKA+ELSvLCd++va+ ifss+gk+yeyss
  Kalax.0279s0029.2.p  9 KRIEDKNSRQVTFSKRKSGLMKKANELSVLCDVDVALFIFSSKGKMYEYSS 59
                         79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.992161IPR002100Transcription factor, MADS-box
CDDcd002651.31E-33261No hitNo description
SuperFamilySSF554556.93E-30269IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-29323IPR002100Transcription factor, MADS-box
PfamPF003195.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MGRGKVELKR IEDKNSRQVT FSKRKSGLMK KANELSVLCD VDVALFIFSS KGKMYEYSSG  60
SRCVCKSFYG KIKDPVGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-20159159MEF2 CHIMERA
6bz1_B2e-20159159MEF2 CHIMERA
6bz1_C2e-20159159MEF2 CHIMERA
6bz1_D2e-20159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024969696.12e-28truncated transcription factor CAULIFLOWER A-like isoform X1
RefseqXP_024969701.13e-28truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ412741e-25AGL8_SINAL; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A2P5B9483e-28A0A2P5B948_PARAD; MADS-box transcription factor
STRINGVIT_14s0068g01800.t012e-27(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-27AGAMOUS-like 8
Publications ? help Back to Top
  1. Menzel G,Apel K,Melzer S
    Identification of two MADS box genes that are expressed in the apical meristem of the long-day plant Sinapis alba in transition to flowering.
    Plant J., 1996. 9(3): p. 399-408
    [PMID:8919916]