PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0282s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 566aa    MW: 63102.4 Da    PI: 7.2078
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0282s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.7e-23122221398
                          EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          k+lt+sd+++ g +++p+++ae++       + ++ +   lt++d +g +W +++iyr++++r++lt+GW++Fv+ ++L +gD+v F++d
  Kalax.0282s0008.1.p 122 KILTQSDANNGGGFSVPRQCAESIfpalnyeEDPPVQ--NLTITDVQGGEWIFRHIYRGTPKRHLLTTGWSKFVNNKKLVAGDTVKFMRD 209
                          89**************************996656656..69999********************************************65 PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                          +  +++l+++++r
  Kalax.0282s0008.1.p 210 N-LTGKLYIGIRR 221
                          4.89999999997 PP
2Auxin_resp64.83e-22267351183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgv.sdldpvrWpnSkWrsLk 83 
                          aa++as++  Fev+ +P+++ ++Fvv+++ v +al+ +++vG+R+kma+e+edss+ +l +G v+ + + l+  +W+ S+W++L+
  Kalax.0282s0008.1.p 267 AAKQASKGLHFEVILYPSVGLPDFVVNADVVDRALSWRWAVGTRVKMAVESEDSSRPTLlQGYVSIIlNVLEGGQWRSSPWKMLQ 351
                          78999****************************************************999**999872567889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-26117229IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.1E-18120223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.688120223IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-30121221IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-20121221No hitNo description
PfamPF023623.8E-20122221IPR003340B3 DNA binding domain
PfamPF065071.3E-18267351IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MFPINFPATQ TVLVDSDLWK ACAGDTFKVP SIDTRVYYFP EGHAELCDSP PPVAQLVCPI  60
VPCRVLHFRF FADRKTDEVF AAVSLQPVGC EYRWAPPASR SVSGRQIGGA EREGRRIESN  120
MKILTQSDAN NGGGFSVPRQ CAESIFPALN YEEDPPVQNL TITDVQGGEW IFRHIYRGTP  180
KRHLLTTGWS KFVNNKKLVA GDTVKFMRDN LTGKLYIGIR RLLRANSGRN GKRSLCGGEA  240
EGTGEEMDDG SWRAGSRRVS ARFVEAAAKQ ASKGLHFEVI LYPSVGLPDF VVNADVVDRA  300
LSWRWAVGTR VKMAVESEDS SRPTLLQGYV SIILNVLEGG QWRSSPWKML QVTWIEPDHL  360
QNVERLSPWQ VEYVEHTASR QPIHLPIEVR DPHIFQPLTA RTKEPRPMMG QKPHSMMAQG  420
DLRYSGLRTR NFLNPNIHLA SMQGARHLSD VSDVIGGDTH RMQNENMFPR SDMFVFRSRI  480
TEVNSGGYQL CSLPAESHSS LCSFGTEVGN TLPPGGINSI QLFGKIIYVE NPVENYQPYD  540
ATFLVSDSSK GDNESEGMEN QSHTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-541237214353Auxin response factor 1
4ldw_A1e-541237214353Auxin response factor 1
4ldw_B1e-541237214353Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-120auxin response factor 17