PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0285s0047.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 88aa    MW: 9976.17 Da    PI: 4.109
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0285s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-0723511646
                         HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          +q    +W++Ia ++g g+++k++ +++q 
  Kalax.0285s0047.1.p 23 NEQVAD-RWDKIATMVG-GKSAKEVEDHYQA 51
                         344444.5*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.028153IPR017877Myb-like domain
SuperFamilySSF466891.2E-9561IPR009057Homeodomain-like
CDDcd001671.27E-4653No hitNo description
Gene3DG3DSA:1.10.10.602.7E-41854IPR009057Homeodomain-like
PfamPF002495.3E-62251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MLKDEAWSWE KNKKFELALL DVNEQVADRW DKIATMVGGK SAKEVEDHYQ ALVQDVNLIE  60
SGLFDDDDEL NELGEPQIIQ KSAITRL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281797.13e-18PREDICTED: protein RADIALIS-like 4
SwissprotQ6NNN04e-14RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A438BNG62e-16A0A438BNG6_VITVI; Transcription factor RADIALIS
TrEMBLA0A443PWL91e-16A0A443PWL9_9MAGN; Protein RADIALIS-like protein 4
STRINGVIT_07s0005g02730.t014e-17(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.11e-15RAD-like 4