PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0285s0054.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 385aa    MW: 42819.3 Da    PI: 6.5101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0285s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.2e-52231492128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          ppGfrFhPtdeel+++yL+ kv + ++     i+evd++k+ePwdLp  +k +++ewyf+s rd+ky+tg r+nrat +gyWkatgkdke
  Kalax.0285s0054.1.p  23 PPGFRFHPTDEELITFYLASKVFHGSFCP-VDIAEVDLNKCEPWDLPDVAKMGKREWYFYSLRDRKYPTGLRTNRATGTGYWKATGKDKE 111
                          9**********************999655.34***************88888999*********************************** PP

                  NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++ +g+ +g+kktLvfy grap+gekt+Wvmheyrl
  Kalax.0285s0054.1.p 112 IHNAaTGAMIGMKKTLVFYLGRAPRGEKTKWVMHEYRL 149
                          **9878899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-6218171IPR003441NAC domain
PROSITE profilePS5100557.31622171IPR003441NAC domain
PfamPF023651.8E-2723149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MLLGIEDVLC ELATEEITGH GYPPGFRFHP TDEELITFYL ASKVFHGSFC PVDIAEVDLN  60
KCEPWDLPDV AKMGKREWYF YSLRDRKYPT GLRTNRATGT GYWKATGKDK EIHNAATGAM  120
IGMKKTLVFY LGRAPRGEKT KWVMHEYRLH GDFFFRAAAK EEWVICRIYH KTGDKKNMLL  180
NEVAAGSQLQ PLLAPGAYMT SSTTRNESFL PQLIDSQLMS SQFLHNQTSG FPAESVSKEA  240
QRRPPLTYNN NLFNFQPESS YYPASAAEHT SLSSMLIKSL LSSEDPRSLK QANNNDASGH  300
VKAEPSFQGL LPGADSLEWF HELQQAASTQ FNNPLLLSNS GGESCSAYVG QVADGAHLNR  360
AGCLQMVVDP NYRIPNGEAW ALDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-521417112168NAC domain-containing protein 19
3swm_B8e-521417112168NAC domain-containing protein 19
3swm_C8e-521417112168NAC domain-containing protein 19
3swm_D8e-521417112168NAC domain-containing protein 19
3swp_A8e-521417112168NAC domain-containing protein 19
3swp_B8e-521417112168NAC domain-containing protein 19
3swp_C8e-521417112168NAC domain-containing protein 19
3swp_D8e-521417112168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313889.11e-113protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_012444453.11e-113PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_012444454.11e-113PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A2P5QJP91e-112A0A2P5QJP9_GOSBA; Uncharacterized protein
STRINGGorai.009G186000.11e-113(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-96NAC family protein