PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0289s0055.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 915aa MW: 102350 Da PI: 6.0001

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0289s0055.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.8	5e-05	687	747	1	54
TT--SS--HHHHHHHHHHHHHSSS--H..HHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsa..eereeLAkkl.....gLterqVkvWFqNrRak 54 +rkR ++++q+ + e++ +++ +++ ++++ A+kl ++t +q k+W Nr+a+ Kalax.0289s0055.1.p 687 KRKRSVMNEKQISVIEKALLEEPDMQRkaASIQSWADKLcsygsEVTSSQLKNWLNNRKAR 747 79****************977776511689**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-4	680	750	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.252	684	751	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MRISKEETSS RCGQVIDLVT AVKELHRLTP QELDKSLKDC EDFTLKHTTE KGSNLKINLE 60 RLAQLLPVHL ISKLVASRRD EDLFKYMLCG GRLLHTLYDL ATRHSKLEQI LLDDLKVSEQ 120 LIDLVFYTLT VLSNRQEYQD WGSLALVLSA LATCYLYLLP QILSLHWHEL AQILVAHPKV 180 DKFIDVAFRV VRLDIRSLQK TLSSESHDLS TSSTAEQSVN YLSQQCEASL QLIASLCHQK 240 LFRERILKNK EVCREGILPL ARSILNLKLC SFLECVAVVA AVSRLKSKII SILLQLCEVE 300 SPSYLDEVAS YPKSLEVAKD IALEVLEVLK KALSRDLRPP DPCSEKPYPM GLLQPNALRL 360 VDMLSDDSNF RSYIAIHFPE VLTAVVSYPH GEFLSAWCSS VPPLGEEDVS LEFDPFAAAG 420 WILDSFSSLG LLNATYSESN FIQNSLPQAS HAHYKTSLLI KIIANLHFFG PEVCKANEKN 480 LFFNKFYECS FKDLPKASQA YAQKAGTVHK NLRSLLAHAE SLVPSFVNED DIQLFRAFFD 540 QLQTLNPPHE FEARPAESKF DSISSWDKFP KLDINGHFQE AQSNGDQVLL AREHENGVDS 600 RKEQVSENAA TRAENDQNFL MEVDICPQND ESSESDSYNT RGKNCIDQSD NNEFPHASER 660 VAESGSTGLQ DNDYLRTLRS EENRPRKRKR SVMNEKQISV IEKALLEEPD MQRKAASIQS 720 WADKLCSYGS EVTSSQLKNW LNNRKARLAR AAAKDVRVGP DGEMGFLEKQ GGSVSGLRDS 780 PENPAEGISG SSSASARASK TPNIITGSST QLAEGHHAWD LGHNVSLMND LGEEIGKGKV 840 HQLQGEWFGR KLLESCTCVI DVTELTGDVS KHGRVPFPSE VTGDTFEETV KKLGAMCVVW 900 DVGKMRPQPP QQRK*

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MRISKEETSS RCGQVIDLVT AVKELHRLTP QELDKSLKDC EDFTLKHTTE KGSNLKINLE  60
RLAQLLPVHL ISKLVASRRD EDLFKYMLCG GRLLHTLYDL ATRHSKLEQI LLDDLKVSEQ  120
LIDLVFYTLT VLSNRQEYQD WGSLALVLSA LATCYLYLLP QILSLHWHEL AQILVAHPKV  180
DKFIDVAFRV VRLDIRSLQK TLSSESHDLS TSSTAEQSVN YLSQQCEASL QLIASLCHQK  240
LFRERILKNK EVCREGILPL ARSILNLKLC SFLECVAVVA AVSRLKSKII SILLQLCEVE  300
SPSYLDEVAS YPKSLEVAKD IALEVLEVLK KALSRDLRPP DPCSEKPYPM GLLQPNALRL  360
VDMLSDDSNF RSYIAIHFPE VLTAVVSYPH GEFLSAWCSS VPPLGEEDVS LEFDPFAAAG  420
WILDSFSSLG LLNATYSESN FIQNSLPQAS HAHYKTSLLI KIIANLHFFG PEVCKANEKN  480
LFFNKFYECS FKDLPKASQA YAQKAGTVHK NLRSLLAHAE SLVPSFVNED DIQLFRAFFD  540
QLQTLNPPHE FEARPAESKF DSISSWDKFP KLDINGHFQE AQSNGDQVLL AREHENGVDS  600
RKEQVSENAA TRAENDQNFL MEVDICPQND ESSESDSYNT RGKNCIDQSD NNEFPHASER  660
VAESGSTGLQ DNDYLRTLRS EENRPRKRKR SVMNEKQISV IEKALLEEPD MQRKAASIQS  720
WADKLCSYGS EVTSSQLKNW LNNRKARLAR AAAKDVRVGP DGEMGFLEKQ GGSVSGLRDS  780
PENPAEGISG SSSASARASK TPNIITGSST QLAEGHHAWD LGHNVSLMND LGEEIGKGKV  840
HQLQGEWFGR KLLESCTCVI DVTELTGDVS KHGRVPFPSE VTGDTFEETV KKLGAMCVVW  900
DVGKMRPQPP QQRK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010652083.1	0.0	PREDICTED: nodulin homeobox
TrEMBL	F6HQ32	0.0	F6HQ32_VITVI; Uncharacterized protein
STRING	VIT_07s0104g01050.t01	0.0	(Vitis vinifera)

Link Out ? help Back to Top
Phytozome	Kalax.0289s0055.1.p