PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0290s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 360aa    MW: 39185.6 Da    PI: 6.2561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0290s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20167217256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+  l+ge
  Kalax.0290s0006.1.p 167 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAFMLRGE 217
                          59******9.**********965...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.08E-34166226No hitNo description
SMARTSM003803.3E-39167230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32167225IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-23167224IPR016177DNA-binding domain
PROSITE profilePS5103222.879167224IPR001471AP2/ERF domain
PRINTSPR003673.5E-11168179IPR001471AP2/ERF domain
PfamPF008472.2E-14168217IPR001471AP2/ERF domain
PRINTSPR003673.5E-11190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAALMDLYSS NRVGSDPFMG GELMEALEPF MRSAPPPPSS SPPSSSSSSN PIYSSSSSSS  60
FQPSFTHPQL YPNPNVFAPG FDSQLDQHSF FNSSSSSFPS SSQFQMFQSY QSQYDPLVNS  120
FPPPCTSVSA PVSNLARESQ QNYVMSFLSA KPVQMKLSAS PAKPTKLYRG VRQRHWGKWV  180
AEIRLPKNRT RLWLGTFDTA EEAALAYDKA AFMLRGEFAR LNFPNLKHSG SVIRGEFGEF  240
KPLHSSVDAK LQAICDEMSE AQKQGKSTGR RKSSKAAALA VNAPPPPAAE DTTEGDGFVC  300
KAENLSNNSG SDGSAGSSPI SELTFPEFDE PAGWNWNPMS ENFMLQKHPS EIDWASILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20166224160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20166230469ATERF1
3gcc_A2e-20166230469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296322e-38KP229632.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF09) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315885.11e-93ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E42e-78RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLD5L1063e-92D5L106_MALDO; AP2 domain class transcription factor
STRINGXP_008362598.13e-92(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-59related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]