PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0291s0010.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 292aa    MW: 33728 Da    PI: 9.4801
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0291s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-16103148148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T  E+ + +++++++G++ W++Iar+++ gRt++++k++w++++
  Kalax.0291s0010.1.p 103 RGKMTSTEERIVLELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 148
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.538097IPR017877Myb-like domain
SuperFamilySSF466892.55E-2083153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-983110IPR009057Homeodomain-like
PROSITE profilePS5129425.81698152IPR017930Myb domain
SMARTSM007176.8E-15102150IPR001005SANT/Myb domain
PfamPF002493.5E-14103147IPR001005SANT/Myb domain
CDDcd001676.46E-10105148No hitNo description
Gene3DG3DSA:1.10.10.601.1E-18111149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNQRLHASFF WVWKTGDINN WEEQSKDRRG SQYDATRYQK GSMDRTRRLS AGKCCRLIWR  60
PPMGFCSKSF RFEGGGRQVL GLNRTGKSCR LRWLNYLHPG LKRGKMTSTE ERIVLELHAR  120
WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKRVNY LSITSSESYS SSSNHTQDSL  180
SCSGKESFYD TGGLAAIAVT GKKQKEEEGE RIKMDEIWND IDISKDTITP LNDSYNQGLC  240
TYSCAPLVSP IWEYCPDPLW RMDEDDSKMP PPSNDYFQTC CEAGTSTLKG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-188415237105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-188415291159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-188415291159MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-188415260128MYB TRANSFORMING PROTEIN
1mse_C2e-188415237105C-Myb DNA-Binding Domain
1msf_C2e-188415237105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860260.18e-96PREDICTED: transcription factor MYB48-like isoform X1
SwissprotQ4JL843e-61MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A2I4HVR82e-94A0A2I4HVR8_JUGRE; transcription factor MYB48-like isoform X1
STRINGXP_010426042.13e-79(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.24e-73myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]