PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0291s0049.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 350aa    MW: 40039.1 Da    PI: 6.6289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0291s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.8e-08205245954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Kalax.0291s0049.1.p 205 ARHRRERISEKMRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 245
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.919196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-13202256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.26E-9202250No hitNo description
SMARTSM003531.2E-12202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-14202265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-5206245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDPHTRGHNH KQLISHSIAW GETASPSSLQ NMASSMEDHH SHLFFHDQPH HHLLLPCLDH  60
HHSSPWQQSS SSDHYNNYSI PFSHSHQIVS SPPSASLFFV GSPAAQHHQL TLLDHHHHEH  120
HQHNNNHIPE EEEDQGNNQP RRDLVAARNN EEDDHDDEVD EELSAMKEMM YKIAAMQPVD  180
IDPSTIRKPK RRNVRISDDP QSVAARHRRE RISEKMRILQ RLVPGGTKMD TASMLDEAIR  240
YVKFLKRQIR HLQQDDHPQQ QPPPVLMPAP ESSKSYLNNT YADDHHLTVT VNDNKHQQYV  300
RLFSADSTTA ANNTSTVSLL QNDDRQADDI SLHFMNSSAI MDKLPAYGK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.19e-45bHLH family protein