PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0293s0011.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 335aa MW: 37692.9 Da PI: 9.618

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0293s0011.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.7e-14	79	123	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a +++ + Wk+I +g ++t q++s+ qky Kalax.0293s0011.3.p 79 RENWTDEEHDKFLEALQLFDRD-WKKIEDFVG-TKTVIQIRSHAQKY 123 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-17	73	129	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.23	74	128	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-7	77	129	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-18	77	126	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-11	78	126	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-12	79	123	IPR001005	SANT/Myb domain
CDD	cd00167	2.91E-9	81	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MNGRRCSSIS LHKFDSVAKS NFSHQFLSLA ATCFTPIPKR NSRAFFLVRP FVWTEMASST 60 PTDALEKKVR KPYTITKSRE NWTDEEHDKF LEALQLFDRD WKKIEDFVGT KTVIQIRSHA 120 QKYFLKVQKN GTLAHVPPPR PKRKSAHPYP QKASKNVLVP LQAPMIYSLS FNNPPSGYSL 180 WDESPMLINT GSSGIVPSQD EFTGLSEVEA DVGPKGVTTM IGSSTAGGSD SSRSFLSSEG 240 PNQDKQAPVV HGIPDFAEVY NFIGSVFDPE TKGHVQKLKE MDPINFETVL LLMRNLTVNL 300 SNPDFEPILI LFDWSRKRYW HHRVTSTPHL LTLP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028775219.1	1e-137	protein REVEILLE 8
Swissprot	Q8RWU3	1e-121	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	M1ARJ8	1e-134	M1ARJ8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400028711	1e-134	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	1e-118	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0293s0011.3.p

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]