PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0294s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 209aa    MW: 22923.3 Da    PI: 8.6625
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0294s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.4e-191273157
                         TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         r++R+++t+eq+  Lee+++   r+psa ++ +++++l    +++ ++V++WFqN++a++k+
  Kalax.0294s0007.1.p 12 RSSRWCPTAEQVMLLEEMYKAgLRNPSAVQIHQITAHLsnfgKVQGKNVFYWFQNHKARDKQ 73
                         689*****************99**************************************97 PP
2Wus_type_Homeobox110.59.1e-361374364
    Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         ++RW+Pt+eQ+++Lee+yk+Glr+P++ +i++ita+L+++Gk+++kNVfyWFQN+kaR++q+
  Kalax.0294s0007.1.p 13 SSRWCPTAEQVMLLEEMYKAGLRNPSAVQIHQITAHLSNFGKVQGKNVFYWFQNHKARDKQR 74
                         79***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.09974IPR001356Homeobox domain
SuperFamilySSF466894.15E-12977IPR009057Homeodomain-like
SMARTSM003892.4E-41178IPR001356Homeobox domain
PfamPF000462.1E-161273IPR001356Homeobox domain
CDDcd000862.42E-41272No hitNo description
Gene3DG3DSA:1.10.10.605.4E-71473IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MCPAGTSASL SRSSRWCPTA EQVMLLEEMY KAGLRNPSAV QIHQITAHLS NFGKVQGKNV  60
FYWFQNHKAR DKQRLKKKLP LKPQHQQIFF HATSSFSPQR PVSCISFAGP LIFTPQGSEA  120
VDAAALSACE AGRDGQCWKK QWSINFEPPP PLCQGRPCLQ TLDLFPVAAA NLKQREEEIE  180
LSSCFDSAAA GSVELGWKPM LSLCVSGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062427.12e-38WUSCHEL-related homeobox 3B-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.14e-30WOX family protein