PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0294s0034.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 419aa MW: 45838.9 Da PI: 6.6624

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0294s0034.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.6	3.2e-09	222	280	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++ ++L +l l+ l++e+ Kalax.0294s0034.2.p 222 KRAKRIWANRQSAARSKERKMRYIAELERKVQALQTDATSLSAQLALLQRDTNGLTAEN 280 9********************************************99998888777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-15	218	282	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.691	220	283	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.71E-10	222	273	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.9E-10	222	276	No hit	No description
Pfam	PF00170	4.1E-8	222	276	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.55E-24	223	272	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MDKEKLPSHG GGLLPPSGRF QTFSPAGNTF NMSSEASAST LPPMGPGATM DSGRFGHGMP 60 SVSGRFSHDI SQMPDNPPKH LGHRRAHSEI LTLPDDINFD SDLGVVGVMD GPTFSDDTEE 120 DLFSMYLDME KFNSSSATSS FPSSDPMNTT SAPCTGTDQS LNAVGTSGER PRVRHQHSQS 180 MDGSSTIKTE TLMSGSEDTS AADSKKAMSA AKLAELALID PKRAKRIWAN RQSAARSKER 240 KMRYIAELER KVQALQTDAT SLSAQLALLQ RDTNGLTAEN SELKLRLQTM EQQVHLQDAL 300 NDALKEEIQH LKVLTGQTMP NGGPMMSYSA FGGNQSHYPS NQSMHTLMAA QQFQQLQIHS 360 QKQQHHQFQQ HQLLQLQQQQ LHQQLDQQQK SGDLKARSTM PSPSQKDNAP ESNQAPKE*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MDKEKLPSHG GGLLPPSGRF QTFSPAGNTF NMSSEASAST LPPMGPGATM DSGRFGHGMP  60
SVSGRFSHDI SQMPDNPPKH LGHRRAHSEI LTLPDDINFD SDLGVVGVMD GPTFSDDTEE  120
DLFSMYLDME KFNSSSATSS FPSSDPMNTT SAPCTGTDQS LNAVGTSGER PRVRHQHSQS  180
MDGSSTIKTE TLMSGSEDTS AADSKKAMSA AKLAELALID PKRAKRIWAN RQSAARSKER  240
KMRYIAELER KVQALQTDAT SLSAQLALLQ RDTNGLTAEN SELKLRLQTM EQQVHLQDAL  300
NDALKEEIQH LKVLTGQTMP NGGPMMSYSA FGGNQSHYPS NQSMHTLMAA QQFQQLQIHS  360
QKQQHHQFQQ HQLLQLQQQQ LHQQLDQQQK SGDLKARSTM PSPSQKDNAP ESNQAPKE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ857085	6e-39	JQ857085.1 Rhodiola bupleuroides clone Rb720 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015867590.1	0.0	probable transcription factor PosF21
Refseq	XP_015867591.1	0.0	probable transcription factor PosF21
Refseq	XP_015867592.1	0.0	probable transcription factor PosF21
Swissprot	Q04088	1e-148	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	M5XCD0	0.0	M5XCD0_PRUPE; Uncharacterized protein
STRING	XP_008222595.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-136	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0294s0034.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]