PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0297s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 387aa    MW: 42555.7 Da    PI: 8.0135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0297s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-09206253455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Kalax.0297s0015.1.p 206 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 253
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-17200270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-11200257No hitNo description
PROSITE profilePS5088815.663202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17202269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6206253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MEKDLLPWTQ NPPATYCSPE MSFSNSTWDH FHSPPPPSAT AAGPAHLNLS MLQHQMPALA  60
ADPGFAERAA RFSCFGSRSF NARSHAQLPT PLDSLKLHRV ASCHFPGSAS PLHGIHIQHT  120
DNTKLPSDSR EESSVSQKVQ SSEPVGRKRK SVPRAKPRLV ESNDPVSKRT KSDEKGGKSN  180
DNSKQPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAV  240
MLDEIINYVQ SLQQQVEFLS MKLATVNPGM DSVHLEALLT KEILQARAAV YSVESSNSAS  300
AAFPFAYQTQ DLSGLPNATT DSQFSLNNDD QLRRSGHHQH GMQLPSFNGF CNSATQVSMW  360
EDELHNVVQM GFAAGSTEPS QMKIEP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264969.24e-97PREDICTED: transcription factor bHLH77
TrEMBLA0A438DY223e-96A0A438DY22_VITVI; Transcription factor bHLH62
STRINGVIT_05s0029g00390.t014e-95(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.14e-72bHLH family protein