PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0297s0026.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 385aa MW: 42130.5 Da PI: 9.4974

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0297s0026.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	6.1e-11	317	362	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq Kalax.0297s0026.1.p 317 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 362 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.151	311	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-14	314	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.19E-10	315	366	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-13	316	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-8	317	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	317	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MTVNINPSPL SSFSFLSFFR HKTRSRSSCS ESLGFSLMFP SSSESNSSSS YSQPSMAARA 60 LNRNASVPAD SLHADDDNNN HHRHHDFSPF LSPPHFNLQP PPYHQYFSAD SPSNCKVNNL 120 NHHPPSESKR LQRSGSGSND FSIAANLKIG AASSSPPLAR RSSSPAGFVA SDSGGFSVPR 180 GSSNYSRGNS SNGPGTSRLK PPLSSTRQDS NMSQLSGIAE NIIEGLNHSN GHRETHNYAY 240 ANDAWDNGAS ITFSGPPSKR NKNEEEYLNS FTGLEHQFSL PQTTLEMATV EKLLQIPEDS 300 VPCKIRAKRG YATHPRSIAE RERRTRISGK LKKLQDLVPN MDKQTSYADM LDLAVQHIKG 360 LQNQVQKLNK DMENCTCGCK RSTS*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MTVNINPSPL SSFSFLSFFR HKTRSRSSCS ESLGFSLMFP SSSESNSSSS YSQPSMAARA  60
LNRNASVPAD SLHADDDNNN HHRHHDFSPF LSPPHFNLQP PPYHQYFSAD SPSNCKVNNL  120
NHHPPSESKR LQRSGSGSND FSIAANLKIG AASSSPPLAR RSSSPAGFVA SDSGGFSVPR  180
GSSNYSRGNS SNGPGTSRLK PPLSSTRQDS NMSQLSGIAE NIIEGLNHSN GHRETHNYAY  240
ANDAWDNGAS ITFSGPPSKR NKNEEEYLNS FTGLEHQFSL PQTTLEMATV EKLLQIPEDS  300
VPCKIRAKRG YATHPRSIAE RERRTRISGK LKKLQDLVPN MDKQTSYADM LDLAVQHIKG  360
LQNQVQKLNK DMENCTCGCK RSTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023925304.1	1e-105	transcription factor bHLH128-like
Swissprot	Q8H102	1e-68	BH128_ARATH; Transcription factor bHLH128
TrEMBL	F6I3R9	1e-102	F6I3R9_VITVI; Uncharacterized protein
STRING	VIT_05s0124g00240.t01	1e-103	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.2	2e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0297s0026.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]