PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0298s0055.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 467aa    MW: 51860.4 Da    PI: 8.1586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0298s0055.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00022828323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+k F r  nL+ H r H
  Kalax.0298s0055.2.p  8 CEVCNKGFQRDQNLQLHRRGH 28
                         *******************88 PP
2zf-C2H210.90.001483105123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  ks+ k H + +
  Kalax.0298s0055.2.p  83 WKCDKCSKNYAVKSDWKAHSKIC 105
                          58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.52E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.13628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.52E-778103No hitNo description
SMARTSM0035522083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MATNRFLCEV CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVVKKKVYIC PEKSCVHHDP  60
SRALGDLTGI KKHFSRKHGE KKWKCDKCSK NYAVKSDWKA HSKICGTREY KCDCGTLFSR  120
KDSFITHRAF CAAVIDQSSS RFAPSVSATI NPLSLRNDFL SGNSVQTHQL SDGGFYPELS  180
SSFHSYGHVN SNNVDGSKSI RHPQWLDHHH HPLNASAHFL MGNPAANLSH ELLLQNAGQG  240
NLFGSSSSSS QAPWLMNKSP DQSAFVNDSM SSLDQILGNA SGGGVMRVKR EDEILGNDNI  300
VDNMPSLYNP TTINQQQQQQ GVTSNQSADQ FLSSFFGRHN SNSLGFMSSG LSNEQLFTDN  360
NNGFADNSSF SRPPPAIKDS HDTANLNHLM LMHESAAAVF KQEITRPNTK HQEESSQTRD  420
FLGVGGNEMI SREEQFQLAA SASEQFGSSS SAAELDVSHY NQEWKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3079139363Zinc finger protein JACKDAW
5b3h_F2e-3079139363Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021683823.11e-107protein indeterminate-domain 9-like
TrEMBLA0A1J0HTI51e-108A0A1J0HTI5_9ROSI; C2H2-type zinc finger protein
TrEMBLA0A1R3KHN71e-108A0A1R3KHN7_COCAP; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.14e-92C2H2-like zinc finger protein