PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0298s0056.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 452aa    MW: 51181.4 Da    PI: 7.0684
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0298s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.48.6e-47121362128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          p+GfrFhP+deel+v+yL++kv++++l++ ++i+e+d+yk++Pw+L++k+  +++e yfFs+rd+ky++g r+nra++sgyWkatg+dk+
  Kalax.0298s0056.1.p  12 PAGFRFHPSDEELIVHYLQPKVASRPLPA-SIIAEIDLYKYHPWELHQKALFGDDEFYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKA 100
                          89***************************.89**************98777899************************************ PP

                  NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++ +++++g+kk Lvfy gr p   kt+W+m+eyrl
  Kalax.0298s0056.1.p 101 IVTSsGSKTIGVKKALVFYVGRPPA--KTEWMMDEYRL 136
                          *99868889*************999..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-579163IPR003441NAC domain
PROSITE profilePS5100554.88511163IPR003441NAC domain
PfamPF023655.4E-2512136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MERGPGTNFN FPAGFRFHPS DEELIVHYLQ PKVASRPLPA SIIAEIDLYK YHPWELHQKA  60
LFGDDEFYFF SPRDRKYPNG LRPNRAAASG YWKATGTDKA IVTSSGSKTI GVKKALVFYV  120
GRPPAKTEWM MDEYRLPETT KRPSRSKSTM RLDDWVLCRV RQKANTTKNL HRAPDPPKPE  180
SMRYLMQVED SLPAVTNNDN EMFKDDMYKH CPVLTSLLTG KPLRPIDTNQ WASPQEIYSS  240
CGSVYEDGSC SDASPMTVSS FGSSLDPLNG KQMQENSTGI PLPSKYLTNE NENSFFGEAQ  300
KMPSDDVMDL CSYLYYEADV FTPSPSSVDM TTDSVFADDI IKLESTIVKQ KDKSKRRRQL  360
WIDGKIRQFC KRKSEVPLQQ VPESARRELK TTEAREEQCE SDAVSASGVG FRSNRRRRSV  420
GDRRGSGEAE FEQKKRENEE CENALGGEDS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-6021688170NO APICAL MERISTEM PROTEIN
1ut4_B1e-6021688170NO APICAL MERISTEM PROTEIN
1ut7_A1e-6021688170NO APICAL MERISTEM PROTEIN
1ut7_B1e-6021688170NO APICAL MERISTEM PROTEIN
3swm_A1e-60216811173NAC domain-containing protein 19
3swm_B1e-60216811173NAC domain-containing protein 19
3swm_C1e-60216811173NAC domain-containing protein 19
3swm_D1e-60216811173NAC domain-containing protein 19
3swp_A1e-60216811173NAC domain-containing protein 19
3swp_B1e-60216811173NAC domain-containing protein 19
3swp_C1e-60216811173NAC domain-containing protein 19
3swp_D1e-60216811173NAC domain-containing protein 19
4dul_A1e-6021688170NAC domain-containing protein 19
4dul_B1e-6021688170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651145.21e-114PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A438DTI41e-113A0A438DTI4_VITVI; NAC transcription factor ONAC010
TrEMBLF6GTZ41e-113F6GTZ4_VITVI; Uncharacterized protein
STRINGVIT_06s0004g03080.t011e-114(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-69NAC-like, activated by AP3/PI