PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0299s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 517aa    MW: 55225 Da    PI: 6.9144
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0299s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-056688123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Kalax.0299s0002.1.p 66 FVCEICSKGFQRDQNLQLHRRGH 88
                         89*******************88 PP
2zf-C2H211.90.00069142164123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +++
  Kalax.0299s0002.1.p 142 WKCEKCSKKYAVQSDWKAHSKVC 164
                          58*****************9877 PP
3zf-C2H211.70.00077172190523
                          TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          dCg++Fsr++++ +H   +
  Kalax.0299s0002.1.p 172 DCGTTFSRRDSFITHRAFC 190
                          9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.42E-66588No hitNo description
SMARTSM003550.0366688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8876688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035598107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4130162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.42E-6137162No hitNo description
SMARTSM00355140142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MPDDASPMAA ASCEEASVSS SGTQAAQPPP PPSSGVKKRR SLPGMPDPDA EVVALSPKTL  60
MATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVRKKVYVCP EAGCVHHDPT  120
RALGDLTGIK KHFCRKHGEK KWKCEKCSKK YAVQSDWKAH SKVCGTKEYK CDCGTTFSRR  180
DSFITHRAFC DVLTDERIRV ARTQVPDKNV ADNSNPDEEV EPEVEIPAVA PPSSPSAAPA  240
LSSANLTGSV LPIQDSDLIW KESETPEELE DAQPPAATCV TESCSNSMNS NSHGNASTGI  300
YGSLFAPLST SASVPNETPG FANFVWDVAT PDGITKLAPS MPTEPISLCL STNHSSAIFR  360
QTVEEPQLYL QQPVMSATAL LQKAAQMGSS SSGSPLLRGL GVVTSLPSRS IQREVLGWNG  420
MHIRSENTSF HASPRLGPEY DASSRFNELM MGNSSIFEPK PTTLDFLGLG MSAGGGSAGG  480
LSALLTSIEG GLDVSAAAAS YGGSGEYPRK DIGRNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33138201366Zinc finger protein JACKDAW
5b3h_F3e-33138201366Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192104KLRQRTSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079066.10.0protein indeterminate-domain 2
SwissprotQ9LVQ71e-159IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A067K9Z70.0A0A067K9Z7_JATCU; Uncharacterized protein
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-123C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]