PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0303s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 255aa MW: 28734.1 Da PI: 6.6764

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0303s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.8e-21	72	132	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F k n +ps++++++++++l +++e++V++WFqNrRa+ k+ Kalax.0303s0008.1.p 72 RQRWAPTPAQLQILENIFDKgNGTPSKQKIKDITSELskhgQVSETNVYNWFQNRRARAKR 132 89***************99************************************97 PP
2	Wus_type_Homeobox	100.3	1.4e-32	71	134	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW+Ptp Q++iLe+++++G tP+k++i++it+eL+++G+++++NV++WFQNr+aR ++kq Kalax.0303s0008.1.p 71 ARQRWAPTPAQLQILENIFDKGNGTPSKQKIKDITSELSKHGQVSETNVYNWFQNRRARAKRKQ 134 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-17	66	135	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.884	68	133	IPR001356	Homeobox domain
SMART	SM00389	3.7E-14	70	137	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.12E-18	71	134	IPR009057	Homeodomain-like
CDD	cd00086	3.02E-13	72	134	No hit	No description
Pfam	PF00046	8.0E-19	72	132	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MMQEQRQQQL VVMTDDQIEI LRKQIAVYTI LCDKLVEMHR SLSSQRDLSG VGIGKSYCDP 60 LMISSSHKIS ARQRWAPTPA QLQILENIFD KGNGTPSKQK IKDITSELSK HGQVSETNVY 120 NWFQNRRARA KRKQTVPATS NSETDGNQEL DSSKEKETKG EIFQSRPIPC SLNDDSRCRS 180 SGMSSDLHSF DPLSSKAEAM FSSEDELKPP TTLGDKSFYD SILSNRRIDQ LSGRLETEGG 240 YQPYHQTDEY SMLG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	133	RRARAKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893569.1	1e-100	WUSCHEL-related homeobox 13
Swissprot	Q5QMM3	6e-77	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2R6Q2B6	1e-96	A0A2R6Q2B6_ACTCH; WUSCHEL-related homeobox like
STRING	Solyc02g082670.2.1	2e-95	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-62	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Kalax.0303s0008.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]