PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0303s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 319aa    MW: 35141.4 Da    PI: 8.141
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0303s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61.1e-1849110257
                          T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++R+t+t++q+++L++l+++   r p+ e++++++++l    +++ ++V++WFqN++a+e++
  Kalax.0303s0012.1.p  49 STRWTPTTDQIRILKDLYYNneVRSPTVEQIQRISARLrqygKIEGKNVFYWFQNQKARERQ 110
                          58****************975589************************************97 PP
2Wus_type_Homeobox104.76.1e-3448112265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++tRWtPt++Qi+iL++ly+ + +r+P+ e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Kalax.0303s0012.1.p  48 SSTRWTPTTDQIRILKDLYYnNEVRSPTVEQIQRISARLRQYGKIEGKNVFYWFQNQKARERQKR 112
                          689***************98689****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-829110IPR009057Homeodomain-like
SuperFamilySSF466895.13E-1130111IPR009057Homeodomain-like
PROSITE profilePS5007110.78745111IPR001356Homeobox domain
SMARTSM003893.5E-547115IPR001356Homeobox domain
PfamPF000464.4E-1650110IPR001356Homeobox domain
CDDcd000865.53E-750112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEAQQQQHNT MMGDDLGGGK LAATSFTRTQ TNSGNNNSLV NNNGGRSSST RWTPTTDQIR  60
ILKDLYYNNE VRSPTVEQIQ RISARLRQYG KIEGKNVFYW FQNQKARERQ KRRFNTTSTT  120
NNNTAPAPLP PSSTVCKPSS LDSSTPHIHT AAAAAAAASK YSDINNNQNL IYPAGHNQMS  180
GFGYAASVTM EKSFRDCSIS TGGSSFGWAK GGMTDHHLSR HPYPHTPYAI YNQRKSINSD  240
EYHQLLASST SDHHEHGDNR GAEIETLPLF PMHGEDINYG FCHLNSAEAD GWFNRDVGSG  300
SRASLELSLN SYAGMDHT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517180.24e-71protein WUSCHEL
RefseqXP_028211599.14e-71protein WUSCHEL-like
TrEMBLA0A445M4471e-69A0A445M447_GLYSO; Protein WUSCHEL
TrEMBLK7K4871e-69K7K487_SOYBN; Uncharacterized protein
STRINGGLYMA01G37190.22e-70(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-42WOX family protein