PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0304s0033.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 663aa    MW: 73964.2 Da    PI: 7.4034
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0304s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.4e-22116217199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f k+lt+sd++ +g +++pk+faee       +++++  ++lt +d +g+ W++++i+r++++r++lt GW  F + +++ +gD+++F  
  Kalax.0304s0033.1.p 116 FSKILTSSDTSPQGGFTVPKRFAEEAlpsldmSQQPPI-QDLTATDIHGKAWTFRHIFRGNPKRHLLTCGWHPFLNNKQVAAGDMCIFV- 203
                          889***************************97545555.49************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + s +el+++++r+
  Kalax.0304s0033.1.p 204 -RGSHGELRIGIRRA 217
                          .449999*****985 PP
2Auxin_resp80.92.9e-27242323283
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           +a+  +++F v+Y+P++ + +F+++++k++k++k+++s+G Rf  ++e+e+s+++r +G v+++ dld +rWp+S+W+ Lk
  Kalax.0304s0033.1.p 242 FNALLYGTIFVVYYHPWTRSCDFIIPYAKYLKSVKMQCSIGARFTTSLEGEESERKRNTGRVIAIDDLDCLRWPGSEWKRLK 323
                          56777889***********************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-34107226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-29109237IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-19114216No hitNo description
PROSITE profilePS5086312.802116218IPR003340B3 DNA binding domain
PfamPF023629.5E-20116217IPR003340B3 DNA binding domain
SMARTSM010191.8E-12116218IPR003340B3 DNA binding domain
PfamPF065071.3E-23242323IPR010525Auxin response factor
PROSITE profilePS5174521.727562647IPR000270PB1 domain
SuperFamilySSF542778.83E-8565640No hitNo description
PfamPF023094.3E-7566643IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MDGGRHELDE ALWHACAGHD IYIPQVGDLV AYFPQGHLEQ VKACTNHDDD LDTSSLFKLP  60
SKILCSVIDV QLKAESKTDE VFARITLHPE AKQEMSEWEE MNDECRSASI RNVKIFSKIL  120
TSSDTSPQGG FTVPKRFAEE ALPSLDMSQQ PPIQDLTATD IHGKAWTFRH IFRGNPKRHL  180
LTCGWHPFLN NKQVAAGDMC IFVRGSHGEL RIGIRRALRK ENSSRSVISG HDMQLGALTS  240
AFNALLYGTI FVVYYHPWTR SCDFIIPYAK YLKSVKMQCS IGARFTTSLE GEESERKRNT  300
GRVIAIDDLD CLRWPGSEWK RLKVEWEAGM SEKLVRPGRI SLWSIESLEP DRRGCMLLPP  360
SKKLSRPGLL PTHVKDGNGI TIQGSSSSFQ DRGNKGAGAP VPSCSWPSSD PFPAYQCAMQ  420
IDKFNPQEYY SGASTYPLGL QGASSPLLSL WPSASGAGGE SSNMADVNGR FLSHDPDEAN  480
GLAATQKELD KHMVFGFNLA STLPEFPSPR PTTASHELHR RRRRSTPMTS PSTCDAKHVS  540
EPRLTEANNR CMRLGCCLTL HDTHAKVRKH GCKVSISIDL TRFNSYKEVI FELDQMFKFE  600
GKLIDGSSEW QVIYIDHEGD LMLLGGDYPW QKFKLIVKRL LILPKECMEQ QLPAECCATA  660
AA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1001234823355Auxin response factor 1
4ldw_A1e-1001234823355Auxin response factor 1
4ldw_B1e-1001234823355Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-109auxin response factor 2