PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0306s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 262aa    MW: 28896.7 Da    PI: 9.0598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0306s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.3e-191560147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd+ l ++v+q+G ++W++I+r ++ gRt+k+c++rw + 
  Kalax.0306s0004.1.p 15 KGPWSPEEDDALHRLVQQHGARNWSLISRSIP-GRTGKSCRLRWCNQ 60
                         79******************************.***********985 PP
2Myb_DNA-binding52.79.8e-1769111347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++++eEde +++a++++G++ W+tIar +  gRt++ +k++w++ 
  Kalax.0306s0004.1.p  69 PFSQEEDETIIRAHARFGNK-WATIARFLT-GRTDNAIKNHWNST 111
                          89******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5191065IPR017930Myb domain
SuperFamilySSF466892.16E-3212108IPR009057Homeodomain-like
SMARTSM007174.1E-171463IPR001005SANT/Myb domain
PfamPF002492.5E-181560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-261668IPR009057Homeodomain-like
CDDcd001671.45E-161759No hitNo description
PROSITE profilePS5129420.74566116IPR017930Myb domain
SMARTSM007172.6E-1466114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2369115IPR009057Homeodomain-like
CDDcd001678.42E-1269112No hitNo description
PfamPF002493.1E-1469111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAMSCGRRDS SDRIKGPWSP EEDDALHRLV QQHGARNWSL ISRSIPGRTG KSCRLRWCNQ  60
LSPQVQHRPF SQEEDETIIR AHARFGNKWA TIARFLTGRT DNAIKNHWNS TLKRKCSVMQ  120
SGFDVPEPTR PLKRSVSAGA APVDPIQLYP GSPSGSDSSE SSNNGLVRMA SLSEELETSL  180
SLSLSLPGGM TVEQQIAKRI EARMPENGAV ALTAEMMAVM QEMIRKEVRS YMAGMEMCSS  240
GSNTGFRDHM GVSQIGFNKI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-39141163105C-Myb DNA-Binding Domain
1msf_C6e-39141163105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210181.13e-94transcription factor MYB44
SwissprotO231603e-84MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A444WTM12e-94A0A444WTM1_ARAHY; Uncharacterized protein
STRINGGLYMA05G21220.17e-92(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.15e-72myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]