PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0306s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 201aa    MW: 21745.8 Da    PI: 7.875
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0306s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.13.8e-302105199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C + C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++ ++++
  Kalax.0306s0013.1.p   2 SCNGCRVLRKGCRDTCILRPCLewidsPESQGHATIFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLGSGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          +++++++e++l++ 
  Kalax.0306s0013.1.p  92 HVCEAAVETVLQGG 105
                          *******9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.241107IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MSCNGCRVLR KGCRDTCILR PCLEWIDSPE SQGHATIFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLGSGN WHVCEAAVET VLQGGKLQPL RDLARCSPDS  120
DEASEVAFQP LNSQMVKRRR RDMDKSGDVD LSLTMSCLAP DSGRSGSPSM DSEKSGTMRS  180
DGNGGRRRVD REVKLLDLFC *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626676.14e-78PREDICTED: LOB domain-containing protein 37
SwissprotQ9SN235e-72LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1R3K4332e-78A0A1R3K433_9ROSI; Uncharacterized protein
STRINGXP_009626676.12e-77(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-74LOB domain-containing protein 38