PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0307s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 422aa    MW: 45397.3 Da    PI: 9.7351
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0307s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-165599147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT+eE++++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Kalax.0307s0017.1.p 55 REKWTEEEHQKFIEALKLYGRA-WRQIEEYIG-TKTAVQIRSHAQKF 99
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-1549105IPR009057Homeodomain-like
PROSITE profilePS5129421.44750104IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-952105IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1653102IPR006447Myb domain, plants
SMARTSM007172.9E-1354102IPR001005SANT/Myb domain
PfamPF002495.7E-145598IPR001005SANT/Myb domain
CDDcd001671.91E-1057100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAPLQIPTAG SKSPVTSIAS GNNSQNILNA NCETDLDGSG VALKVRKPYT ISKQREKWTE  60
EEHQKFIEAL KLYGRAWRQI EEYIGTKTAV QIRSHAQKFF SKVTKESASS GEAPTEAIDI  120
PPPRPKRKPL HPYPRKFVEA PNKTRQGPSL KENGSSTISK NLETGALSPT SVLSPEVAHI  180
STSHAKAQGS GSVSATSSGS HSSCVLEKSN PIKNNSTPIK EKDLLRTLNL SGPSSHDSTS  240
VQTRKKFKDI ELTKDEGVYS EAETKFFGGA SPLKAIKLFG QTVVVTKPLD LSLGMKNVVM  300
PTATRGPLMC CVSHMDSLVG SQPYDSSPDG QLVTGGILMG ERSREKGGSK GFSVNGSISD  360
AISKAYNEET NQDSVDSKIR SSEGPILSPS EGRKGFVPYK RCVSEREAVL QMNKADCRVC  420
L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.13e-35circadian clock associated 1