PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0309s0023.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TCP

Protein Properties

Length: 361aa MW: 40494.6 Da PI: 7.4127

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0309s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.9	4.3e-39	151	306	4	133
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa..sec...eaesss 79 k rhski T++g+RdRR+Rls+++a+rfF Lqd+LGfdk+s t+eWLl +++ +i + +g +s s c e++s++ Kalax.0309s0023.1.p 151 TKGRHSKIDTAQGPRDRRMRLSLDIARRFFGLQDMLGFDKASRTVEWLLSKSQFEINKVAGRkdndafnsaKS--DsfSPCecgEEVSEV 238 588*********************************************************88887765422..234555446666666 PP TCP 80 ssasnsssg.............kaaksaa..kskksqksaasalnlakesrakarararertrekmrik 133 +++n s++ + ++++ k + s++++ ++ +kesr+karararert+ek++i Kalax.0309s0023.1.p 239 DNKDNLSQSgamdtdketkksrS-KEKKIrgKVSVSSRKNGFNHLANKESREKARARARERTKEKKMIC 306 66664444477888888877542.222221233333333333344455***************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-41	151	304	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.664	151	209	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	12.397	285	302	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MFPTPDNNDS NSFAVPYSDH QYLFYSKLLD DVHIDNNYQN PACSPFSSFG LHFHADPPPP 60 FLYSSDHHEH PLQIQDNPGE EQLPRVTIHQ EFITAASSSS SARGYCTADE NFLQSGFAGD 120 GDPTDGIGGT SAVRPVKQHD DTVRNNGILL TKGRHSKIDT AQGPRDRRMR LSLDIARRFF 180 GLQDMLGFDK ASRTVEWLLS KSQFEINKVA GRKDNDAFNS AKSDSFSPCE CGEEVSEVDN 240 KDNLSQSGAM DTDKETKKSR SKEKKIRGKV SVSSRKNGFN HLANKESREK ARARARERTK 300 EKKMICHSQS YSKQQQFLNP EQHTYSYVDQ GHMMTDQDGS LANSTCWNPS STRTTIVNRL 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MFPTPDNNDS NSFAVPYSDH QYLFYSKLLD DVHIDNNYQN PACSPFSSFG LHFHADPPPP  60
FLYSSDHHEH PLQIQDNPGE EQLPRVTIHQ EFITAASSSS SARGYCTADE NFLQSGFAGD  120
GDPTDGIGGT SAVRPVKQHD DTVRNNGILL TKGRHSKIDT AQGPRDRRMR LSLDIARRFF  180
GLQDMLGFDK ASRTVEWLLS KSQFEINKVA GRKDNDAFNS AKSDSFSPCE CGEEVSEVDN  240
KDNLSQSGAM DTDKETKKSR SKEKKIRGKV SVSSRKNGFN HLANKESREK ARARARERTK  300
EKKMICHSQS YSKQQQFLNP EQHTYSYVDQ GHMMTDQDGS LANSTCWNPS STRTTIVNRL  360
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-23	TCP domain protein 12

Link Out ? help Back to Top
Phytozome	Kalax.0309s0023.1.p