PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0313s0006.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 393aa MW: 42121.4 Da PI: 9.2117

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0313s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.1	1.7e-16	31	126	2	74
trihelix 2 WtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 Wt qe+++Liea++ ++er ++ ++ +W++v +++++rg+ rs++qC++kw+nl ++ykk+++ e Kalax.0313s0006.1.p 31 WTLQETMVLIEAKKMDDERRLKRPgcssseqqqvtgsqemlmmirnkPAELRWKWVEDYCWRRGCFRSQNQCNDKWDNLMRDYKKVRDYE 120 ***********95555544322235556667777777777777779999************************************* PP trihelix 69 kkrtse 74 +k +++ Kalax.0313s0006.1.p 121 RKLAEQ 126 *98655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.435	23	110	IPR017877	Myb-like domain
Pfam	PF13837	1.5E-11	30	122	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MADQSGGAGG GGVVASGGGG GLMREYRKGN WTLQETMVLI EAKKMDDERR LKRPGCSSSE 60 QQQVTGSQEM LMMIRNKPAE LRWKWVEDYC WRRGCFRSQN QCNDKWDNLM RDYKKVRDYE 120 RKLAEQNAAA GTSSSSSLGG SVSYWNMDRS ERKERSLPSN MSSTIYEALV DVVEKKVGAG 180 SSSAAALLSP ATVVNTSGTP TPTDVLQAAT PTIMPPTAAL SLLHQQHLNA SVAALCLPLP 240 EIAGVAPLPL PPPLPSAQPN IPTCQPATTT IRDSSDSDTS SDSPAKRRRK NKGPETGGGP 300 PSSRNEAAGV ANAISKGASK ISEAIQASES RREERHREML GLKQRRLQIE EARMEVNRQG 360 MSGLAEAINN LANSIMALAA SNNNHGQAPP PP*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MADQSGGAGG GGVVASGGGG GLMREYRKGN WTLQETMVLI EAKKMDDERR LKRPGCSSSE  60
QQQVTGSQEM LMMIRNKPAE LRWKWVEDYC WRRGCFRSQN QCNDKWDNLM RDYKKVRDYE  120
RKLAEQNAAA GTSSSSSLGG SVSYWNMDRS ERKERSLPSN MSSTIYEALV DVVEKKVGAG  180
SSSAAALLSP ATVVNTSGTP TPTDVLQAAT PTIMPPTAAL SLLHQQHLNA SVAALCLPLP  240
EIAGVAPLPL PPPLPSAQPN IPTCQPATTT IRDSSDSDTS SDSPAKRRRK NKGPETGGGP  300
PSSRNEAAGV ANAISKGASK ISEAIQASES RREERHREML GLKQRRLQIE EARMEVNRQG  360
MSGLAEAINN LANSIMALAA SNNNHGQAPP PP*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018858778.1	2e-98	PREDICTED: trihelix transcription factor ASR3-like isoform X1
TrEMBL	A0A2I4HRK6	4e-97	A0A2I4HRK6_JUGRE; trihelix transcription factor ASR3-like isoform X1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-54	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kalax.0313s0006.1.p