PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0315s0031.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 337aa    MW: 37357.7 Da    PI: 4.4638
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0315s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-1996148456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++++ +q++ Le+ Fe ++++  +++ +LAk+lgL+ rqV +WFqNrRa++k
  Kalax.0315s0031.1.p  96 KRRLSVDQVQFLERSFEAENKLEPDRKIQLAKELGLQPRQVAIWFQNRRARWK 148
                          568999**********************************************9 PP
2HD-ZIP_I/II130.37.5e-4295185292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrls +qv++LE+sFe+e+kLep+rK +la+eLglqprqva+WFqnrRAR+ktkq+E+dy+aL+++y++lk++ e+L +e+e+L++e+
  Kalax.0315s0031.1.p  95 KKRRLSVDQVQFLERSFEAENKLEPDRKIQLAKELGLQPRQVAIWFQNRRARWKTKQMERDYDALQASYNSLKSSCEALVEENENLKAEV 184
                          9**************************************************************************************998 PP

          HD-ZIP_I/II  92 k 92 
                           
  Kalax.0315s0031.1.p 185 V 185
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1982152IPR009057Homeodomain-like
PROSITE profilePS5007117.05490150IPR001356Homeobox domain
SMARTSM003897.4E-1993154IPR001356Homeobox domain
CDDcd000869.15E-1995151No hitNo description
PfamPF000461.4E-1696148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1997157IPR009057Homeodomain-like
PRINTSPR000317.8E-6121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000317.8E-6130146IPR000047Helix-turn-helix motif
PfamPF021835.5E-17150191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAAGGSRVFR SGNLTSCSES MAPVSNPPAI ASSSRHSDAL FLPGSSRFPG SSSAMVSFED  60
VNGSMGRNTR SFFTAFDQDD NGDEDYEEYL NQAGKKRRLS VDQVQFLERS FEAENKLEPD  120
RKIQLAKELG LQPRQVAIWF QNRRARWKTK QMERDYDALQ ASYNSLKSSC EALVEENENL  180
KAEVVALSEK LASKENPLQN AEHSEASKQS AAVPDNPISN SASEEEDSKF PLVEQKLLDD  240
FTSAKSDIFQ SDSPRYADGV YSPHLEHVDS SYVFEPDNNS DLSQDEDDSL PKAYLPSSSY  300
MLPPLKHGDY PDLSATSSSN FGSAHGDHQP FWSWSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022738208.11e-104homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBLA0A061FXY91e-103A0A061FXY9_THECC; Homeobox protein, putative isoform 1
STRINGEOY217131e-103(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-43homeobox 1