PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0316s0036.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 401aa    MW: 43971.1 Da    PI: 7.9719
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0316s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.6e-1752112257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++R+++++eq+++Le  F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Kalax.0316s0036.1.p  52 KPRWNPKPEQIRILEGIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 112
                          89*****************99*************************************995 PP
2Wus_type_Homeobox111.15.8e-3651113264
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          +++RW+P+peQi+iLe +++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k
  Kalax.0316s0036.1.p  51 PKPRWNPKPEQIRILEGIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 113
                          689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.15E-1246117IPR009057Homeodomain-like
PROSITE profilePS5007110.30148113IPR001356Homeobox domain
SMARTSM003894.4E-850117IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-651120IPR009057Homeodomain-like
CDDcd000862.63E-851114No hitNo description
PfamPF000466.7E-1552112IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNPH QQWPHEFSSS LLTGCHINPY TSGIEERSPE PKPRWNPKPE  60
QIRILEGIFN SGMVNPPRDE IRKIRAQLQE YGQVGDANVF YWFQNRKSRS KHKNRQVPKS  120
QQNQSNQPAA GRTTTNPSIP ATTTPANSSS IKTSSSSSSD KSSPKLINSS KNSTSPAGFS  180
LGSCSSNLLD QLAYSPATSV NQNYDHLVQH DQPFMFPLQH LNFTAQGFPG FPDHQQIMMA  240
NRNNNNLINN NVPHSVGPCT EFLFSELISS QHGVGSDPKK DAEDEEKLMI MKLGFSTAPS  300
AASTVGNNLP LSASNVMTLP STLNQLQGAG EYSGPVAVGP IKLTVFINDV AFEVNCGPFY  360
VREAFGDDAV LLHSTGQPVL TNEWGVTLQP LQHGAFYYLI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230917.11e-124WUSCHEL-related homeobox 9
TrEMBLA0A061GG541e-120A0A061GG54_THECC; Homeobox-3, putative
STRINGEOY281171e-121(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.15e-57homeobox-3