PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0317s0020.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 343aa MW: 37924.9 Da PI: 6.518

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0317s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.8e-14	79	123	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a +++ + Wk+I +g ++t q++s+ qky Kalax.0317s0020.1.p 79 RENWTDEEHDKFLEALQLFDRD-WKKIEDFVG-TKTVIQIRSHAQKY 123 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-17	73	129	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.23	74	128	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-7	77	129	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-18	77	126	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-11	78	126	IPR001005	SANT/Myb domain
Pfam	PF00249	5.9E-12	79	123	IPR001005	SANT/Myb domain
CDD	cd00167	3.07E-9	81	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0032922	Biological Process	circadian regulation of gene expression
GO:0043966	Biological Process	histone H3 acetylation
GO:0046686	Biological Process	response to cadmium ion
GO:0048573	Biological Process	photoperiodism, flowering
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MNGRRCSSIS LHKFDSVAKS NFSHQFLSLA ATCFTPIPKQ NSRAIFLVRP FVWTEMASST 60 PTDALEKKVR KPYTITKSRE NWTDEEHDKF LEALQLFDRD WKKIEDFVGT KTVIQIRSHA 120 QKYFLKVQKN GTLAHVPPPR PKRKSAHPYP QKASKNVLVP LQAPMVYSLS FNNPPSGYSL 180 WDESPMLINS GSSGIVPSQD EFTGLSEVEA DVGPKGVTTM IGSSTAGGSD SSRSFPSSEV 240 PDQDKQAPVV HGIPDFAEVY NFIGSVFDPD TKGHVQKLKE MDPINFETVL LLMRNLTVNL 300 SNPDFEPIKT VLASSCDIDT TSVDPTVGSI RDQEETDIVS LS*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MNGRRCSSIS LHKFDSVAKS NFSHQFLSLA ATCFTPIPKQ NSRAIFLVRP FVWTEMASST  60
PTDALEKKVR KPYTITKSRE NWTDEEHDKF LEALQLFDRD WKKIEDFVGT KTVIQIRSHA  120
QKYFLKVQKN GTLAHVPPPR PKRKSAHPYP QKASKNVLVP LQAPMVYSLS FNNPPSGYSL  180
WDESPMLINS GSSGIVPSQD EFTGLSEVEA DVGPKGVTTM IGSSTAGGSD SSRSFPSSEV  240
PDQDKQAPVV HGIPDFAEVY NFIGSVFDPD TKGHVQKLKE MDPINFETVL LLMRNLTVNL  300
SNPDFEPIKT VLASSCDIDT TSVDPTVGSI RDQEETDIVS LS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00338	DAP	Transfer from AT3G09600	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028775219.1	1e-141	protein REVEILLE 8
Swissprot	Q8RWU3	1e-124	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A1R3HQD3	1e-139	A0A1R3HQD3_COCAP; Uncharacterized protein
STRING	PGSC0003DMT400028711	1e-140	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	1e-121	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kalax.0317s0020.1.p

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]