PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0320s0046.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 468aa    MW: 52151.7 Da    PI: 5.8017
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0320s0046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35181082101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y++++d++++e++sws  +nsfvv+d+ efa+++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k
  Kalax.0320s0046.1.p  18 FLLKTYDMVDDSSTDEIVSWSVANNSFVVWDPPEFARTLLPTYFKHNNFSSFIRQLNTYGFHKIDPEK---------WEFANEDFVKDQK 98 
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll++i+r+k
  Kalax.0320s0046.1.p  99 HLLKNIHRRK 108
                          ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3814107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-6114107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3514107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.1E-3118107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDLATVAAGG GSGGPAPFLL KTYDMVDDSS TDEIVSWSVA NNSFVVWDPP EFARTLLPTY  60
FKHNNFSSFI RQLNTYGFHK IDPEKWEFAN EDFVKDQKHL LKNIHRRKPI HSHSIPQASA  120
IDPDRAAFEE EIEGLTREKV EYEAMILKFE EQHSSVKVHL DTLTQRVGGL ELRQQHLLSF  180
LEKAIQNPTF VDRLSKKIES MHFSAYSKKR RLPQNESYHP ITDSSFTDDQ SSSRPVIGQM  240
FHQDFSNKLN LALSPCVTDA HLVSHSTQSS NEGGKSSQRI VCEGSQREAQ LRSECAPFSP  300
DTVELSDTGT SFTLNMNLSL PCKMATSGNM CLKTAEEGDG LGLCHLNLSL ASSPLQTNRN  360
QCQVDPEHGG TSESRSSANE KDTPKHNTGE VIPSLQEVQS SNQAQLAAPQ PRVNDAFWEQ  420
YLTERPGCSD NEEASSNYKS NIYDALEDRR SRHGTSPNLN TSNRLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-22110712129Heat shock factor protein 1
5d5v_B3e-22110712129Heat shock factor protein 1
5d5v_D3e-22110712129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868967.10.0heat stress transcription factor A-5
RefseqXP_015870139.10.0heat stress transcription factor A-5-like
SwissprotQ94BZ51e-144HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A0N7DK210.0A0A0N7DK21_9ROSI; Heat shock transcription factor A5a
STRINGPOPTR_0017s08630.11e-180(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-144HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]