PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0321s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 466aa    MW: 51518.4 Da    PI: 5.5305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0321s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11281327354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h e+Er RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Kalax.0321s0005.1.p 281 VNHVEAERMRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVLYINEL 327
                          689************************6.....4***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-2335177IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.266278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-16279347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-9281327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-12281327No hitNo description
Gene3DG3DSA:4.10.280.106.6E-15282346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-13284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEEQEELVIS NTRQPPSCSS TCLSHDTNNL HLFTLHQKLQ MLLEVETPYS MTCWSHAIFW  60
QLTTTAAARP YLAWGDGHIR TSTQYNNSMM QKCHWFYMTS VGKSFTSGDG TVVTQAASGS  120
QPYMWLLLND NPYNCARATE ARINGIQTFV CVPVDGGVLE LASCHAVPDS WLLLRQVIEP  180
LFDSHPNHDR PFFSMPAGCF DDVSFSDIPI ISGEKSDDPA RDDDDNLDLS RVAKTEMMAL  240
AHASSDLDCL FMDSSSSSRI LNQKRRAGRK PAAMQKDAQP VNHVEAERMR REKLNHRFYA  300
LRAVVPNVSR MDKASLLSDA VLYINELCCK VAHLESSLSK LQASPSSLNN NNNSSSDTTQ  360
MMAKQLLPSS SSSSLSLASD DSHNVEVEVR VVGGDAMIRV ISEDVDYPAA RLMCALREMG  420
LLIHHASVSC VNELVIQDVL VRVPPGACNE EAYLKSVLIK ILDTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-23279342566Transcription factor MYC2
5gnj_B3e-23279342566Transcription factor MYC2
5gnj_E3e-23279342566Transcription factor MYC2
5gnj_F3e-23279342566Transcription factor MYC2
5gnj_G3e-23279342566Transcription factor MYC2
5gnj_I3e-23279342566Transcription factor MYC2
5gnj_M3e-23279342566Transcription factor MYC2
5gnj_N3e-23279342566Transcription factor MYC2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-41bHLH family protein