PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0322s0023.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 412aa MW: 45130.4 Da PI: 5.11

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0322s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.3e-08	351	396	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwq 45 +W++ E+ l+ +vk+ G g+WktI + +Rt ++k++w+ Kalax.0322s0023.1.p 351 KWSKREEATLKAGVKRVGAGSWKTIFNLYRntfVNRTTMDLKDKWR 396 7********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.71E-12	347	398	IPR009057	Homeodomain-like
SMART	SM00717	0.0014	348	401	IPR001005	SANT/Myb domain
CDD	cd11660	7.70E-14	350	399	No hit	No description
Pfam	PF00249	7.3E-6	351	397	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-9	351	396	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.189	351	399	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MESQDAAAPS IAPDEACASA VKAAELLIDN ARNPAGKEIV EDRPLPLTDG RDGTLAEVTG 60 VVPRRTYRRL TDAEALILYQ MLKRREREIQ LQIEGGIADP LPTVGVSDPL PAPEVVNEAR 120 TPITLLKNAE NVTSFDSNHV IDVPSSLEMD AEEVAAVETP LTKEASYREQ CEEEVAARET 180 PVTNKASSSQ MCAEEASTRA THLTDNPSSS KVYVNEASAG ETNANHVIDI PSTPEMDVEE 240 VAALETLVTN KASSSQVYAE EASTREAHLT ENPSSSKVYL EEALTRETRL TDHPTSSKLY 300 VEEGASIEIP MTKDASSSRA VRYNLRKRGP NARKYKENEG SRFVGRRKII KWSKREEATL 360 KAGVKRVGAG SWKTIFNLYR NTFVNRTTMD LKDKWRVITG GTGDKAKRTL N*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MESQDAAAPS IAPDEACASA VKAAELLIDN ARNPAGKEIV EDRPLPLTDG RDGTLAEVTG  60
VVPRRTYRRL TDAEALILYQ MLKRREREIQ LQIEGGIADP LPTVGVSDPL PAPEVVNEAR  120
TPITLLKNAE NVTSFDSNHV IDVPSSLEMD AEEVAAVETP LTKEASYREQ CEEEVAARET  180
PVTNKASSSQ MCAEEASTRA THLTDNPSSS KVYVNEASAG ETNANHVIDI PSTPEMDVEE  240
VAALETLVTN KASSSQVYAE EASTREAHLT ENPSSSKVYL EEALTRETRL TDHPTSSKLY  300
VEEGASIEIP MTKDASSSRA VRYNLRKRGP NARKYKENEG SRFVGRRKII KWSKREEATL  360
KAGVKRVGAG SWKTIFNLYR NTFVNRTTMD LKDKWRVITG GTGDKAKRTL N*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	3e-09	telomere repeat binding factor 3

Link Out ? help Back to Top
Phytozome	Kalax.0322s0023.1.p