PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0323s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 317aa    MW: 35667.5 Da    PI: 8.0447
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0323s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.3e-08750341
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqck 41
                         +WT++E+  l+ +++++G+g Wk I r        ++R+  ++k
  Kalax.0323s0022.1.p  7 KWTADEEAALLAGIAKHGPGKWKIILRDTDfatplQNRSNIDLK 50
                         8*************************998877777777777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-8551IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-8552IPR009057Homeodomain-like
CDDcd116601.10E-11650No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVNQKIKWTA DEEAALLAGI AKHGPGKWKI ILRDTDFATP LQNRSNIDLK VHPHAKSLHI  60
SVYFVIYSVV CGWPERARLR RRRPSSLHLG LLERVGGDQN GRFAPVDEEG EGSHGGLKQE  120
HDAVDEEEGE TWLLQEHDAE PRFETAVGLR FETVTRLFGK PRFETAARLR PAAVSNSYLP  180
KTENLYTIRN ASVARSKGLI LEQKQIKTHH SSSREACRWL KSLSEASKTA AYKIAAAESK  240
SFQADEAFNE ADRASKLAEE SDCFLEIAKD IFERCKHLLI SWVLEVKLFT FNSALFGISL  300
VISMFEFGRH QPSQLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-18MYB_related family protein