PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0325s0001.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 597aa    MW: 65928.1 Da    PI: 6.893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0325s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12428474455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Kalax.0325s0001.1.p 428 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITELQ 474
                          799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-5046240IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.28E-18423487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.876424473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-14427478No hitNo description
Gene3DG3DSA:4.10.280.102.1E-17428487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10428474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-16430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MRMGWNEEEK ALIASVLGNR AIDYLLASLG SNDGGQLMAL GTDENLNNKL SNLVERPDSS  60
EFTWNYAIFW QLSRSRNGDM VLGWGDGCCR EAKDGEELRV ATSPGHTLEE EEEEDDESRQ  120
RMRKRVLHNL HAVLGGFEED NFVLHLDRVT DTEMFFLASM YFSFPQGQGG PGMCLKLGKH  180
FWLPDLPKSS RDYCVRSFLA TTAGFRTIVL VPTDMGVIEL GSVRSVPESL EWVQSLKSLF  240
SLRSQVRTSR LSNENILSLK SEYGVKAGGN TMIFGQDLNS CRHGLFREKL AIRKNDRPWT  300
ACNSQGAIQL ANIQNGSTGW AQLCSNRQVS SPGMFTSAAA AVAANNLHEL VNGAQQDFRL  360
NNYQSKKQIQ IDFSAAPRKP VVNQPVSAES EHSDVEASCK EAGSSQAADR RPKKRGRKPA  420
NGRDEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITYI TELQAKLKDL  480
ESERIKLGNA SVTGNTLTLG SNSTAEVQNR VVDIESSQDE VVVKVTCPLE AHPANRVIQA  540
FKDAQINVVD SKLAAIDNTV FHTFVIKSSG CNQITTERVT AALARDSSQL ELSSRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-30422489269Transcription factor MYC2
5gnj_B7e-30422489269Transcription factor MYC2
5gnj_E7e-30422489269Transcription factor MYC2
5gnj_F7e-30422489269Transcription factor MYC2
5gnj_G7e-30422489269Transcription factor MYC2
5gnj_I7e-30422489269Transcription factor MYC2
5gnj_M7e-30422489269Transcription factor MYC2
5gnj_N7e-30422489269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409417RRPKKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081876.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A167V6C10.0A0A167V6C1_CAMSI; MYC2 trancriptor
STRINGXP_009781532.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-165bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]