PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0325s0021.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 221aa    MW: 24149.2 Da    PI: 6.9539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0325s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-193785355
                  AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++GVr ++ +gr++AeIrd ++    ++ ++lg+f+ta+eAa+a++aa+++++g
  Kalax.0325s0021.1.p 37 FRGVRKRP-WGRYAAEIRDpFK----KTGVWLGTFDTADEAARAYDAAARSFRG 85
                         8*******.**********662....5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.6293693IPR001471AP2/ERF domain
PfamPF008471.0E-123685IPR001471AP2/ERF domain
SMARTSM003803.1E-353699IPR001471AP2/ERF domain
CDDcd000182.00E-183693No hitNo description
SuperFamilySSF541711.18E-213794IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-293793IPR001471AP2/ERF domain
PRINTSPR003679.9E-103748IPR001471AP2/ERF domain
PRINTSPR003679.9E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSRKYSFPIM RKVKVAAVAG HDHAGPEMRD PESEIRFRGV RKRPWGRYAA EIRDPFKKTG  60
VWLGTFDTAD EAARAYDAAA RSFRGPKART NFPFPSSPPL HPPVTLNPLP PPPLSYHNPA  120
HMFSAQYIHR PASSSMSSTV ETFSGPKLSN PLAALPSTRV LFHQPVPEEG PDCHSDCDSS  180
SSVVNFEEGG AWGVPDLNLP PPMDDADMNC DDLDATALRL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1936931472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022947976.17e-46ethylene-responsive transcription factor 3-like
RefseqXP_022970780.17e-46ethylene-responsive transcription factor 3-like
RefseqXP_022970781.17e-46ethylene-responsive transcription factor 3-like
RefseqXP_023534086.17e-46ethylene-responsive transcription factor 3-like
SwissprotO803393e-30ERF82_ARATH; Ethylene-responsive transcription factor 3
SwissprotQ9LDE44e-30ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0V0HV087e-47A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGXP_008456400.12e-44(Cucumis melo)
STRINGXP_004143195.12e-44(Cucumis sativus)
STRINGXP_004172004.12e-44(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.19e-21ERF domain protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]