PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0327s0012.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

TCP

Protein Properties

Length: 269aa MW: 28476.6 Da PI: 10.7614

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0327s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.1	9e-36	40	138	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 ++ ++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ a++ + + ss+ Kalax.0327s0012.1.p 40 PRKASKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVAGTLQIPTT--SSSrpdp 127 56789*********************************************************8888855532222222222..2221233 PP TCP 89 ..........k 89 k Kalax.0327s0012.1.p 128 kdllpgqvefK 138 33333333331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.0E-30	43	136	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.063	44	98	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGSVQKPEFD RGDDVTVTAS TAVSMKEEPF AEATKPAVPP RKASKDRHTK VEGRGRRIRM 60 PATCAARIFQ LTRELGHKSD GETIRWLLEH AEPAIIAATG TGTVPAIAMS VAGTLQIPTT 120 SSSRPDPKDL LPGQVEFKKR KRVGDTFPTA TDANAAITAS SSSLKTAFAP PQVVSSRPGI 180 VPMWAIPSNA VWMVPLATNQ QPIWALSPTP TPIVTLAARP ISSAAASSVP PPPSSASTKT 240 TPSSSSTRTH PLRDLSLEIR DKTELHLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015582875.2	4e-73	LOW QUALITY PROTEIN: transcription factor TCP9
Swissprot	Q9LT89	6e-58	TCP19_ARATH; Transcription factor TCP19
TrEMBL	F6I360	7e-74	F6I360_VITVI; Uncharacterized protein
STRING	VIT_15s0048g01150.t01	1e-74	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	8e-57	TCP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0327s0012.1.p