PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0327s0024.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 277aa MW: 31708.3 Da PI: 9.0062

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0327s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	110	133	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF +L +H + H Kalax.0327s0024.1.p 110 WRCGYCKKSFYAEKYLDQHFDNrH 133 58*****************76666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	112	133	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MAMTKVVATI LVLLSISSQS SVTVSSASIL NHGFKDVDEP ATGRTLKEDR HEVHCSRERS 60 RAAWKITEDY LMPFVEREKY QLSTKCRLHP DNDVYRDQEQ HKIHFDINEW RCGYCKKSFY 120 AEKYLDQHFD NRHYNLLNAS ESRCLADLCG ALHCDQVLNT KATKTKCNPA AAARNHHSCE 180 GLADSCFPAN EGPSASRLHE LFLRQFCDAH TCSGKYKPFP RGGKKQSGVF YLSISILTLM 240 LLPIFYLMVF LYQREMRNGT QELKRITKFG RKKKPS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021808464.1	1e-144	uncharacterized protein LOC110752165
TrEMBL	A0A2N9FJD7	1e-144	A0A2N9FJD7_FAGSY; Uncharacterized protein
STRING	XP_008239409.1	1e-141	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-121	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Kalax.0327s0024.1.p