PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0329s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 651aa    MW: 72036.7 Da    PI: 10.0315
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0329s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07540589147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +        k+Rt  ++k++w ++
  Kalax.0329s0013.1.p 540 RRPFSVSEVEALVQAVEKLGTGRWRDVKLQAFdnaKHRTYVDLKDKWKTL 589
                          678999********************8877779**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542366.9E-7346436IPR029071Ubiquitin-related domain
PROSITE profilePS500538.655350420IPR000626Ubiquitin domain
PROSITE profilePS5129415.812535594IPR017930Myb domain
SMARTSM007172.9E-7539592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10540590IPR009057Homeodomain-like
SuperFamilySSF466891.71E-15541622IPR009057Homeodomain-like
CDDcd116604.93E-17541591No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MVFQKRLDYG FSGYQVPPTP RAARSARRRA SSFKKKVDEN QMCAFDLLAT LAGKILLEGE  60
KSVGVGRCEV EQDSKKKQSL PHKSLKVEPH DSSSYQPSLK STNNASEVHN PEPTLKLSPP  120
CSIKASSDSG HLGHPIKVKA AAFQPDPLIK PEVDKAIKSE PPVKPAVGVE AGTYSCRKFE  180
VRKLEPEPPP HSGSAANAPP LYGDHATGDT SCVKTVSRDD DEKSSGCTTH PSTLSKPYMS  240
SPPRIVDRRI RKFLAYKYWN VAPKLKDGEE AHHTDVDKQR RCCFRRQRSQ RNYPFKKRKM  300
YCHGSLSNSD DGATDKQMPC SNIDAFNSVV GTSSSIMGDN VRFKRRDSHV KLRIKSFRVP  360
ELFIEISEMA TVSSLKRTVM EAVTAILGDG LRVGVLLHGK KIGDDSKTLL QTGISHDNQL  420
DSVGFSLEPN TSPNPPSLTS ANSPHILPSE TRQPLTRYVS QEVRRGGAAD MSLDPPLTSI  480
GNFVESDHDS APSPDLTVDK YAANSRAIVP VQAMKMEAAP APPPNHRKSK HSEAGQRRIR  540
RPFSVSEVEA LVQAVEKLGT GRWRDVKLQA FDNAKHRTYV DLKDKWKTLV HTAKISPQQR  600
RGEPVPQELL DRVLDAHAYW SLQQAKQQRE TRMFLELEPA PAPAAAHNRN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A9e-545246361113Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289298QRNYPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283389.20.0PREDICTED: telomere repeat-binding protein 5
TrEMBLF6GV030.0F6GV03_VITVI; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-105TRF-like 2