PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0330s0028.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 380aa    MW: 41220.5 Da    PI: 6.6067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0330s0028.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13319364655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Kalax.0330s0028.2.p 319 SIAERVRRTKISERMRRLQELVPNM----DKQTNTSDMLDMAVDYIKDLQ 364
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.027313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16316376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-12317368No hitNo description
Gene3DG3DSA:4.10.280.102.6E-15318374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-10319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDADLHQARQ FNPVVVGGGG GGSGGLTRYR SAPSSYFSNF GMEYKDVSDF LRPPPPKPLS  60
PQIDRIFAQL ASEIPGDHTL EVEAAITTPV MKLEIEPELP PAAPVMMASY TPSAGLPPPH  120
PLSRTSSGVN TSSHRGLKSS AAQPVRIPVV EKPSSGSNIA RHNSLPAGLF SQIDVHNVAA  180
TYFGTGSNQA NSSSDLMSAY SGIGNDNMKP EEDDDYMLNG FWNDSSSTEK LLTGVKRERA  240
EDEFLSGGAL EDIKPFSKDS NIPAAGEMKK SGLLSHHLSL PKSSMEMLSA MEKFLDLQDS  300
TTVPVGVRAK RGCATHPRSI AERVRRTKIS ERMRRLQELV PNMDKQTNTS DMLDMAVDYI  360
KDLQQRVQIL QACRERCTC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-46bHLH family protein