PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0331s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 748aa    MW: 82977.9 Da    PI: 7.2556
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0331s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.21.1e-2194149156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  Kalax.0331s0008.1.p  94 RKKYHRHTAEQIREMEALFKESPHPDEKQRQDLSKQLGLSSRQVKFWFQNRRTQIK 149
                          7999************************************************9877 PP
2START195.91.8e-612654892205
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                          +a+ a +el ++a++++p+Wv+s+    e++n+d++++ f ++            +ea+r++++v+++l++l ++++d   +W+e ++  
  Kalax.0331s0008.1.p 265 IANHAVEELKQMATVGAPLWVQSVeagrEILNYDVYMKLFCKETDtfsslrptEAIEASRDTRLVFADLPQLAQSFMDAD-KWKELFPtm 353
                          678899*********************************97755589*********************************.****99999 PP

                          ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS
                START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158
                            ka+t++ i++g      ga+qlm+aelq+l+p+vp R+++f+R+++ql+a +w+ivdvSvd   ++  +s + ++ ++pSg++ie++s
  Kalax.0331s0008.1.p 354 isKATTIDIIRNGegpsrnGAVQLMFAELQMLTPMVPsREVYFIRSCKQLSASQWAIVDVSVDKYMDNA-ESLFKKCSKRPSGCIIEDTS 442
                          99******************************************************************9.8******************* PP

                          TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                          ngh+kv+wveh ++++  +h+++r +v+sg+a+ga++w+atlq qce
  Kalax.0331s0008.1.p 443 NGHCKVIWVEHLECQKIPVHNMYRTIVNSGQAFGASRWMATLQLQCE 489
                          **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2278145IPR009057Homeodomain-like
SuperFamilySSF466891.8E-2080152IPR009057Homeodomain-like
PROSITE profilePS5007118.10791151IPR001356Homeobox domain
SMARTSM003892.1E-1693155IPR001356Homeobox domain
PfamPF000464.8E-1994149IPR001356Homeobox domain
CDDcd000865.62E-1798149No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PROSITE profilePS5084837.762255493IPR002913START domain
SuperFamilySSF559612.47E-28257490No hitNo description
CDDcd088752.02E-100259489No hitNo description
SMARTSM002347.9E-55264490IPR002913START domain
PfamPF018527.5E-49265489IPR002913START domain
Gene3DG3DSA:3.30.530.202.7E-4372489IPR023393START-like domain
SuperFamilySSF559611.4E-11533718No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MSHLPSYPTK NFIDSPALTL SLAGIFHRAD PAPVVTATAK VVERHNGVVR REEAVEISSD  60
NSGPSCRSRS DDDTGFEGEG NDEDDVNEQR KKKRKKYHRH TAEQIREMEA LFKESPHPDE  120
KQRQDLSKQL GLSSRQVKFW FQNRRTQIKA FQERHENSLL KSEMEKLRKE NKLMRETIQK  180
TCCPSCGIST SGKESSSSTE EKYLRIENKR LKSEVENLQS ALSKYSGPGT GLPDSGHAEQ  240
EPKSSLGLST SAEVLGLQKS TIMNIANHAV EELKQMATVG APLWVQSVEA GREILNYDVY  300
MKLFCKETDT FSSLRPTEAI EASRDTRLVF ADLPQLAQSF MDADKWKELF PTMISKATTI  360
DIIRNGEGPS RNGAVQLMFA ELQMLTPMVP SREVYFIRSC KQLSASQWAI VDVSVDKYMD  420
NAESLFKKCS KRPSGCIIED TSNGHCKVIW VEHLECQKIP VHNMYRTIVN SGQAFGASRW  480
MATLQLQCEH LVFLKATNVP TKEANGIATV VGRKSTLTLA RRMSSSFCRA LGASSHHTWT  540
KVASTTGDDI RVSSRKNLHN PGEPHGLIVC AVSSVWIPVP PRELFDFIRD ERHRHEWDML  600
SNGVPVQSIT NLAKGQDRGN SVTIQATESK DNPIWLLQDT CTNTFESTIV YGLVDPTHMR  660
SAVMNGCNSS NTAILPSGFS ILSDGLESRP SVITSQPEDT NSGGSLLTMA IQALVNTSPT  720
AEAVDSVSTL VSCALSNIRK CLQCEDI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18895QRKKKRKK
28995RKKKRKK
39195KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875609.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2N9FB880.0A0A2N9FB88_FAGSY; Uncharacterized protein
STRINGXP_009338062.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]