PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0335s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 233aa    MW: 25734.6 Da    PI: 10.7246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0335s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-133785255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         +++h+e+E rRR+riN+ + +Lr +lP+ +      K +Ka+ L ++v+++k+Lq
  Kalax.0335s0005.1.p 37 KKSHSEAESRRRKRINDHLTTLRGILPSkL------KTDKATLLMETVQHVKELQ 85
                         789*************************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.70E-103387No hitNo description
Gene3DG3DSA:4.10.280.103.9E-133587IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.5963584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-123691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-103785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-74190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.9E-6131187No hitNo description
CDDcd048730.00872132195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDKFVFPQRA SSFMAAPMTT AMMMATRFAT NKPKAEKKSH SEAESRRRKR INDHLTTLRG  60
ILPSKLKTDK ATLLMETVQH VKELQQKFAE VAGSGGEGGM KPLLPTETDT VSVSRCQDEE  120
VGEKNNLFVK ATVCCEDRPD LNRDLVQLVR SVQGKITRAE MASVGGRTKM VVTLKLTGGG  180
GEEEVRRVRR GLLAVVENRA SGRIGHSKRG RFVMPNRTDG YGGMSNYNYS LR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107684.19e-55transcription factor bHLH30
TrEMBLW9RXF42e-53W9RXF4_9ROSA; Uncharacterized protein
STRINGXP_010107684.13e-54(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-31bHLH family protein