PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0335s0038.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 329aa MW: 37435.3 Da PI: 4.6144

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0335s0038.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.1	5.3e-47	1	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +p GfrF+Ptdee+v +yL++k+ + ++++ ++i e+d +k+ePwdLpk + +++e +++++rd+ky++g r+nratk+g+Wkatgkd+ Kalax.0335s0038.1.p 1 MPFGFRFNPTDEEVVIHYLAPKAINCEFSV-SFIGEADFNKCEPWDLPKIENMDNSERFYYCQRDRKYPNGLRTNRATKAGFWKATGKDR 89 689***********************99.89***********5545566799**************************** PP NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ ++el+g++ktLvfy+grap+gek++Wvm eyrl Kalax.0335s0038.1.p 90 EIYRGkipRRELIGMRKTLVFYTGRAPRGEKANWVMYEYRL 130 988888899**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	49.862	1	155	IPR003441	NAC domain
SuperFamily	SSF101941	7.06E-53	1	156	IPR003441	NAC domain
Pfam	PF02365	7.3E-23	2	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MPFGFRFNPT DEEVVIHYLA PKAINCEFSV SFIGEADFNK CEPWDLPKIE NMDNSERFYY 60 CQRDRKYPNG LRTNRATKAG FWKATGKDRE IYRGKIPRRE LIGMRKTLVF YTGRAPRGEK 120 ANWVMYEYRL MPQFFASSMI TPQNEEWVLA RVFYKNDNLG GGAMHSKPYN DHESTSGSLS 180 IKADQQRLVI REDFESLPPL VDHSTFLLPL PPPPPTVVKP LMCPPAPAIE DDDLLIYADN 240 PVHFYPAYSA TLLPPEIFGC EQPKKDHKID ESNNVAIGDA VEISKCQPEP PDYPVETSSN 300 ANQAFDDIDD EFDLPDLGSL PDLSILWD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-38	1	158	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-38	1	158	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-38	1	158	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-38	1	158	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	3e-38	1	158	20	171	NAC domain-containing protein 19
3swm_B	3e-38	1	158	20	171	NAC domain-containing protein 19
3swm_C	3e-38	1	158	20	171	NAC domain-containing protein 19
3swm_D	3e-38	1	158	20	171	NAC domain-containing protein 19
3swp_A	3e-38	1	158	20	171	NAC domain-containing protein 19
3swp_B	3e-38	1	158	20	171	NAC domain-containing protein 19
3swp_C	3e-38	1	158	20	171	NAC domain-containing protein 19
3swp_D	3e-38	1	158	20	171	NAC domain-containing protein 19
3ulx_A	3e-38	1	157	15	170	Stress-induced transcription factor NAC1
4dul_A	2e-38	1	158	17	168	NAC domain-containing protein 19
4dul_B	2e-38	1	158	17	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021281943.1	8e-67	NAC domain-containing protein 92-like
TrEMBL	A0A2U1PD19	2e-67	A0A2U1PD19_ARTAN; No apical meristem (NAM) protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04060.1	9e-68	NAC domain containing protein 46

Link Out ? help Back to Top
Phytozome	Kalax.0335s0038.1.p