PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0335s0039.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 317aa    MW: 35928.1 Da    PI: 4.6539
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0335s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1492.3e-46201482128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          p GfrF+P+dee++v+yL  k+++ ++++ ++i e+d +k+ePwdLpk  + +++e +++++rd+ky++g r+nr+t +g+Wkatg+d+e
  Kalax.0335s0039.1.p  20 PFGFRFNPSDEEVIVHYLMLKARNCDFSV-DFIGEADFNKCEPWDLPKIENMDNTERFYYCQRDRKYPNGLRTNRTTMAGFWKATGRDRE 108
                          88***************************.99***************6555577799********************************* PP

                  NAM  92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++    ++e +g++k+Lvfy+grap+g+kt+Wvm eyrl
  Kalax.0335s0039.1.p 109 IYTGhvdRRERIGMRKSLVFYTGRAPRGKKTNWVMYEYRL 148
                          **987878888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5316172IPR003441NAC domain
PROSITE profilePS5100548.87219171IPR003441NAC domain
PfamPF023653.0E-2120148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MANLSSQARF TAKGGLKGIP FGFRFNPSDE EVIVHYLMLK ARNCDFSVDF IGEADFNKCE  60
PWDLPKIENM DNTERFYYCQ RDRKYPNGLR TNRTTMAGFW KATGRDREIY TGHVDRRERI  120
GMRKSLVFYT GRAPRGKKTN WVMYEYRLMP QFFTSFMIPQ NEWVVARVFY KNTNSGGGRG  180
TMQSDEGGSD SVSQVADAPS TAHERLIMNA DFESLPPLVV EHSAAFLDAL PPPQTNTATV  240
DTYQQDDDVL IYAENPAQFY PTYAATLLPP DLFGCEQPTD NKCKAEPPNY PGENSQNANL  300
AFDDTDDDML DLPDLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-421917517169NO APICAL MERISTEM PROTEIN
1ut4_B1e-421917517169NO APICAL MERISTEM PROTEIN
1ut7_A1e-421917517169NO APICAL MERISTEM PROTEIN
1ut7_B1e-421917517169NO APICAL MERISTEM PROTEIN
4dul_A1e-421917517169NAC domain-containing protein 19
4dul_B1e-421917517169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024983086.11e-61NAC domain-containing protein 92-like
SwissprotQ9SQQ65e-60NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A118JZL62e-60A0A118JZL6_CYNCS; No apical meristem (NAM) protein
TrEMBLA0A1R3KVD43e-60A0A1R3KVD4_COCAP; No apical meristem (NAM) protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.12e-62NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]