PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0335s0044.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 238aa    MW: 26349.2 Da    PI: 9.8263
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0335s0044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-17970257
                         T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++R+++t+eql +Le+lF+    r+p+ +++  +A++l     ++ ++V++WFqNr+ +e++
  Kalax.0335s0044.1.p  9 STRWNPTREQLSQLESLFNGqgIRTPTPAQINSIARRLlaygPIKGKNVFYWFQNRKGRERR 70
                         58*****************6568*************************************97 PP
2Wus_type_Homeobox92.15.2e-30871264
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         ++tRW+Pt eQ+  Le+l++ +G+rtP+ ++i+ i+++L +yG i++kNVfyWFQNrk Rer++
  Kalax.0335s0044.1.p  8 SSTRWNPTREQLSQLESLFNgQGIRTPTPAQINSIARRLLAYGPIKGKNVFYWFQNRKGRERRQ 71
                         689*****************9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.55E-11475IPR009057Homeodomain-like
PROSITE profilePS5007112.001571IPR001356Homeobox domain
SMARTSM003895.9E-6775IPR001356Homeobox domain
CDDcd000861.00E-61072No hitNo description
PfamPF000463.2E-151070IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-81071IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDPISGRSST RWNPTREQLS QLESLFNGQG IRTPTPAQIN SIARRLLAYG PIKGKNVFYW  60
FQNRKGRERR QKRKMERQRM SANTHNNINS LNNKNNIVFN NLNNNNTENV AVSGYFNRFY  120
DRPPPSISPA LSLTTGRPHS LFQTTPLSAE VRILPTLSQD GPPKSSQQSD VVSSPQCDIS  180
NNEVNNAEVN DALFGEGSGS RVTPATLDLF PVHPTGILQE RDDGGQSDGD SNLVIID*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.16e-19WUSCHEL related homeobox 2