PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0336s0030.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28907 Da    PI: 8.8623
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0336s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81e-26961151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT..SEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst..gklyeyss 51
                         k+ienk nrqvtfskRr+g++KKA ELSvLCda++a+i+fs +  +klye++s
  Kalax.0336s0030.1.p  9 KKIENKVNRQVTFSKRRTGLFKKATELSVLCDAQIAIIVFSGDrpDKLYEFAS 61
                         68***************************************874579***986 PP
2K-box79.96.1e-27861731299
                K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          ++a+s ++e++kL+++ e Lqr+qR+llGedLe+Ls+keL+ Le+q+e sl + R +K++++ e +e l+k+e+ l e+nk+L++k +
  Kalax.0336s0030.1.p  86 REAQSAYHEVQKLQAKCEALQRTQRNLLGEDLEPLSIKELHALEKQIEVSLAQTRLRKTQVVNERMESLRKQERHLGEINKKLKMKKM 173
                          57899*******************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-34162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.656163IPR002100Transcription factor, MADS-box
CDDcd002653.41E-36274No hitNo description
SuperFamilySSF554555.49E-29280IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-21323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-241059IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-213859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2386171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.56988178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048437Biological Processfloral organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRGRIEHKK IENKVNRQVT FSKRRTGLFK KATELSVLCD AQIAIIVFSG DRPDKLYEFA  60
SPGQRIGKIL ERYQSMVAPP PGGLHREAQS AYHEVQKLQA KCEALQRTQR NLLGEDLEPL  120
SIKELHALEK QIEVSLAQTR LRKTQVVNER MESLRKQERH LGEINKKLKM KKMEIEAEGE  180
TYHALWNTYN ASASAGTNFP LQPTHPNLME CEMAEPVLEM GYPQNHYVRE EGTTSRANNV  240
VDELNFIQGW HC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-19781713100Developmental protein SEPALLATA 3
4ox0_B6e-19781713100Developmental protein SEPALLATA 3
4ox0_C6e-19781713100Developmental protein SEPALLATA 3
4ox0_D6e-19781713100Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280892.13e-86agamous-like MADS-box protein AGL6
SwissprotQ8LLR16e-85MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLO826998e-85O82699_MALDO; MADS domain class transcription factor
STRINGXP_008342931.11e-85(Malus domestica)
STRINGXP_008347113.11e-85(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-83AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]