PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0337s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 547aa    MW: 61297.2 Da    PI: 4.509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0337s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.1e-5191361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yL++k+ gk +++ ++i+ +d+yk+ePw+Lp k k+k+++ ewyfFs  d+ky +g+++nrat++gyWk+tgk
  Kalax.0337s0011.1.p   9 LAPGFRFHPTDEELVRYYLRRKICGKGFRF-DAIAATDVYKSEPWELPgKsKLKSRDLEWYFFSMLDRKYGNGSKTNRATENGYWKTTGK 97 
                          579**************************9.99***************6347777888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++vl+ k ++vg+kktLv+++grap+g +++Wvmheyrl
  Kalax.0337s0011.1.p  98 DRPVLH-KAKTVGMKKTLVYHRGRAPHGARSNWVMHEYRL 136
                          ******.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-616159IPR003441NAC domain
PROSITE profilePS5100557.2089159IPR003441NAC domain
PfamPF023655.7E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGRKPATSLA PGFRFHPTDE ELVRYYLRRK ICGKGFRFDA IAATDVYKSE PWELPGKSKL  60
KSRDLEWYFF SMLDRKYGNG SKTNRATENG YWKTTGKDRP VLHKAKTVGM KKTLVYHRGR  120
APHGARSNWV MHEYRLIDED LEKAGVLQDA FVLCRIFQKS GSGPKNGEQY GAPFEEEEWD  180
DDEVATVPGE QLTNEVVVFD NPYPEVGDGN TDADELVQNN YDISPSAPPP FDYCDDSGSY  240
LFDDQKPFIG TRENYESNLV DGESCFDVLN FPEPCEGEVK QVKEEHLVDS GENLLDASYL  300
LDEHYLNANQ EPVLNEGLFL ETDDLINQME PGPSDFDMLD EYLKYFDSAD YNSTYVLPEN  360
GALPQTESQV VATKSLLTPE VDKEIEYLAL KSQQLPDAQG SDVASSSSQC PEDTKFNSDY  420
KHQFVNMLGK KPSPYSFSTK DASLRLASSS HSSSSIHVTA GMVQIRNTDA FGNRLSWTFN  480
KNGNIEVVLS LALSQTDGNS TSVDMLANML SGKASSAMAR VWFYLIVFWV FIISISFKIA  540
SLVSTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-47816519174NAC domain-containing protein 19
3swm_B4e-47816519174NAC domain-containing protein 19
3swm_C4e-47816519174NAC domain-containing protein 19
3swm_D4e-47816519174NAC domain-containing protein 19
3swp_A4e-47816519174NAC domain-containing protein 19
3swp_B4e-47816519174NAC domain-containing protein 19
3swp_C4e-47816519174NAC domain-containing protein 19
3swp_D4e-47816519174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124170.11e-179NAC domain-containing protein 78-like
RefseqXP_028125950.11e-179NAC domain-containing protein 78-like
TrEMBLA0A161CG381e-178A0A161CG38_MORAL; NAC domain containing transcription factor 78-like protein
TrEMBLR4NHQ21e-178R4NHQ2_JATCU; NAC transcription factor 044
STRINGVIT_13s0019g05240.t011e-178(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-134NAC domain containing protein 2