PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0338s0019.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 505aa    MW: 54930.9 Da    PI: 8.2836
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0338s0019.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.51.5e-142564242
                  TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                         ++k+CnCk+skClk+YCeCfa+g++C++ C+C +C+N+ e+
  Kalax.0338s0019.2.p 25 RQKQCNCKHSKCLKLYCECFASGTYCEN-CNCVNCHNNMEH 64
                         689************************9.********9875 PP
2TCR51.32.3e-16109148140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Kalax.0338s0019.2.p 109 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 148
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-172464IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.41325149IPR005172CRC domain
PfamPF036384.0E-112661IPR005172CRC domain
SMARTSM011143.5E-20109150IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.1E-13112147IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MTTTFLLIRK PESPQTKTKD GTPKRQKQCN CKHSKCLKLY CECFASGTYC ENCNCVNCHN  60
NMEHEASRRE AVEATLERNP NAFRPKIAGS PQVNRAAKEA TGDLLLLAKH NKGCHCKKSG  120
CLKKYCECFQ ANILCSENCK CIDCKNFEGS EERKALHGDQ ATNMAYIQQA ANAAITGAVG  180
LSGFISPPLS KRRKGPDIFF GSSSNDLSKI AHIHPVNTGK SPAPSNSSST SVARSVNPPV  240
SSLSKFTYRS LLADIIQPHD LKELCSNLVV MSREVVKTYS EQENASAHEA TEHKILIATP  300
NQNRTRTHNE AAAENAIIND PDCSCPDNVD MPDRPLSPGT LALMCDEQDT LFMSNSTPNR  360
LTSQGGNSGS QFHNVDEMTE VHAEQEKVVL TKFRDTLNRL IYFGEIKERK CLSLARGEAG  420
MKDAFSNSSI NGRYATTNQP IPIPTSNSKN AYSVAATRID TSAASTTTTT SAAATIVSNS  480
IGQQLHIPSV GRTGNIKPKI EQHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-322615611130Protein lin-54 homolog
5fd3_B3e-322615611130Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475649.10.0protein tesmin/TSO1-like CXC 5 isoform X2
RefseqXP_024952904.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-155TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A067DUG90.0A0A067DUG9_CITSI; Uncharacterized protein
STRINGXP_006475649.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-139Tesmin/TSO1-like CXC domain-containing protein