PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0338s0019.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 444aa    MW: 47956.8 Da    PI: 7.9688
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0338s0019.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.61.9e-164887140
                  TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                         k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Kalax.0338s0019.3.p 48 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 87
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163424.235188IPR005172CRC domain
SMARTSM011143.5E-204889IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.3E-135186IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEHEASRREA VEATLERNPN AFRPKIAGSP QVNRAAKEAT GDLLLLAKHN KGCHCKKSGC  60
LKKYCECFQA NILCSENCKC IDCKNFEGSE ERKALHGDQA TNMAYIQQAA NAAITGAVGL  120
SGFISPPLSK RRKGPDIFFG SSSNDLSKIA HIHPVNTGKS PAPSNSSSTS VARSVNPPVS  180
SLSKFTYRSL LADIIQPHDL KELCSNLVVM SREVVKTYSE QENASAHEAT EHKILIATPN  240
QNRTRTHNEA AAENAIINDP DCSCPDNVDM PDRPLSPGTL ALMCDEQDTL FMSNSTPNRL  300
TSQGGNSGSQ FHNVDEMTEV HAEQEKVVLT KFRDTLNRLI YFGEIKERKC LSLARGEAGM  360
KDAFSNSSIN GRYATTNQPI PIPTSNSKNA YSVAATRIDT SAASTTTTTS AAATIVSNSI  420
GQQLHIPSVG RTGNIKPKIE QHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-2419547130Protein lin-54 homolog
5fd3_B1e-2419547130Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451190.11e-155protein tesmin/TSO1-like CXC 5
RefseqXP_006475649.11e-155protein tesmin/TSO1-like CXC 5 isoform X2
RefseqXP_024952904.11e-155protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-122TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A067DUG91e-154A0A067DUG9_CITSI; Uncharacterized protein
TrEMBLV4UJK81e-154V4UJK8_9ROSI; Uncharacterized protein
STRINGXP_006475649.11e-154(Citrus sinensis)
STRINGXP_006451190.11e-154(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-117Tesmin/TSO1-like CXC domain-containing protein