PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0341s0035.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 335aa MW: 38136.9 Da PI: 4.5318

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0341s0035.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.5	4.9e-48	1	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +p GfrF+Ptdee+vv+yL++k+ + ++++ ++i e+d +k+ePwdLpk + +++e +++++rd+ky++g r+nratk+g+Wkatgkd+ Kalax.0341s0035.1.p 1 MPFGFRFNPTDEEVVVHYLAPKAINCEFSV-SFIGEADFNKCEPWDLPKIENMDNSERFYYCQRDRKYPNGLRTNRATKAGFWKATGKDR 89 689***********************99.89***********5545566799**************************** PP NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ ++el+g++ktLvfy+grap+gekt+Wvm eyrl Kalax.0341s0035.1.p 90 EIYRGkipRRELIGMRKTLVFYTGRAPRGEKTNWVMYEYRL 130 988888899**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.51	1	155	IPR003441	NAC domain
SuperFamily	SSF101941	8.89E-54	1	156	IPR003441	NAC domain
Pfam	PF02365	1.7E-23	2	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MPFGFRFNPT DEEVVVHYLA PKAINCEFSV SFIGEADFNK CEPWDLPKIE NMDNSERFYY 60 CQRDRKYPNG LRTNRATKAG FWKATGKDRE IYRGKIPRRE LIGMRKTLVF YTGRAPRGEK 120 TNWVMYEYRL MPQFFTSSMI TPQNEEWVLA RVFYKNDHLG GGTTTMHSKP YNDHESTSGG 180 SLSIKADQQR LVIREDFESL PPLADHSTFL LPLPPPPPAV KPLMCPPAPA IDPCQDDDDL 240 LIYADNPVHF YPAYSATLLP PELFGCEQPK DHKIDESNNN VAIGDEVEIN KCQPEPPDYP 300 VETSSNANQA FDDIDDEFDL PDLGSLPDLS ILWD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-39	1	157	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-39	1	157	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-39	1	157	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-39	1	157	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	6e-39	1	157	20	170	NAC domain-containing protein 19
3swm_B	6e-39	1	157	20	170	NAC domain-containing protein 19
3swm_C	6e-39	1	157	20	170	NAC domain-containing protein 19
3swm_D	6e-39	1	157	20	170	NAC domain-containing protein 19
3swp_A	6e-39	1	157	20	170	NAC domain-containing protein 19
3swp_B	6e-39	1	157	20	170	NAC domain-containing protein 19
3swp_C	6e-39	1	157	20	170	NAC domain-containing protein 19
3swp_D	6e-39	1	157	20	170	NAC domain-containing protein 19
3ulx_A	5e-39	1	157	15	170	Stress-induced transcription factor NAC1
4dul_A	4e-39	1	157	17	167	NAC domain-containing protein 19
4dul_B	4e-39	1	157	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023769928.1	7e-68	NAC domain-containing protein 87-like
Swissprot	Q9SQQ6	1e-65	NAC46_ARATH; NAC domain-containing protein 46
TrEMBL	A0A2U1PD19	4e-67	A0A2U1PD19_ARTAN; No apical meristem (NAM) protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04060.1	1e-67	NAC domain containing protein 46

Link Out ? help Back to Top
Phytozome	Kalax.0341s0035.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Oda-Yamamizo C, et al. Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves. Sci Rep, 2016. 6: p. 35125 [PMID:27759025] O'Shea C, et al. Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1. J. Biol. Chem., 2017. 292(2): p. 512-527 [PMID:27881680]